Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8274g00009 ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGATGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCTTCGCCGTCTATTCCTGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCTCATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCAGGTGGATCCATATCATCGCTGTTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACCGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGTTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTTTCTGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTCTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGTGAACATATGACTTCTCTTACTTTGTCATCTAATGTCACGGAAAATTTTATAGCTTCATCACCATCATGTACCCCAAATGATGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTAATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCACTGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAATTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAGCTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCCTGTTCTCCCAATGTTGACAGGACAAGTGATGATACTGCTTCTCGAAATTTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCTACTGTTGGCCATGTAAATAACCATACATCTCAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAGCGAACAAGATTTGCTTCTCCCAGCAAATAA 1974 0.4488 MQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAVLFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMTSLTLSSNVTENFIASSPSCTPNDESILCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSHNDVKYKSLMSTDIESFNPMSDPSDDWGCKFDASSELENREVNFVTDENYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVDRTSDDTASRNFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSTVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8274g00009 657 Coils Coil 100 127 - -
Vium8274g00009 657 MobiDBLite consensus disorder prediction 508 657 - -
Vium8274g00009 657 ProSiteProfiles Protein kinase domain profile. 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00009 657 SUPERFAMILY Protein kinase-like (PK-like) 66 331 IPR011009 -
Vium8274g00009 657 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vium8274g00009 657 MobiDBLite consensus disorder prediction 638 657 - -
Vium8274g00009 657 Pfam Protein kinase domain 68 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00009 657 MobiDBLite consensus disorder prediction 606 628 - -
Vium8274g00009 657 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 338 - -
Vium8274g00009 657 SMART serkin_6 67 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00009 657 FunFam Mitogen-activated protein kinase kinase kinase 2 66 359 - -
Vium8274g00009 657 MobiDBLite consensus disorder prediction 588 605 - -
Vium8274g00009 657 MobiDBLite consensus disorder prediction 445 476 - -
Vium8274g00009 657 CDD STKc_MAPKKK 66 330 - -
Vium8274g00009 657 MobiDBLite consensus disorder prediction 508 581 - -
Vium8274g00009 657 Coils Coil 608 628 - -
Vium8274g00009 657 Gene3D Transferase(Phosphotransferase) domain 1 66 361 - -
Vium8274g00009 657 FunFam Serine/threonine-protein kinase STE11 63 157 - -
Vium8274g00009 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8274g00009 Vium-Chr8274 45046 50952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8274g00009 1 657 MAP Kinase Kinase Kinase AT1G54960 57.040 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium8274g00009 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8274g00009 K20606 - gmx:100807537 1148.27