Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8274g00008 ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGATGAGACCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATACGAACTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCTTCGCCGTCTATTCCTGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTTCCAGGTGGATCCATATCATCGCTGTTGGGGAAGTTTGGGGCTTTCCCTGAGGCTGTAATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGCATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACCGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGTTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTTTCTGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTCTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGTGAACATATGACTTCTCTTACTTTGTCATCTAATGTCACGGAAAATTTTATAGCTTCATCACCATCATGTACCCCAAATGATGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACAATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTAATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCACTGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAATTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATCAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAGCTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCCTGTTCTCCCAATGTTGACAGGACAAGTGATGATACTGCTTCTCGAAATTTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCTACTGTTGGCCATGTAAATAACCATACATCTCAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAGCGAACAAGATTTGCTTCTCCCAGCAAATAA 1908 0.4534 MQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAVLFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMTSLTLSSNVTENFIASSPSCTPNDESILCSSTVNPLDSGNKQLWGMSNDDDDMCVIDDKEEFSHNDVKYKSLMSTDIESFNPMSDPSDDWGCKFDASSELENREVNFVTDENYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVDRTSDDTASRNFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSTVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8274g00008 635 MobiDBLite consensus disorder prediction 616 635 - -
Vium8274g00008 635 MobiDBLite consensus disorder prediction 486 559 - -
Vium8274g00008 635 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vium8274g00008 635 Gene3D Transferase(Phosphotransferase) domain 1 66 339 - -
Vium8274g00008 635 MobiDBLite consensus disorder prediction 584 606 - -
Vium8274g00008 635 Pfam Protein kinase domain 68 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00008 635 SMART serkin_6 67 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00008 635 MobiDBLite consensus disorder prediction 486 635 - -
Vium8274g00008 635 CDD STKc_MAPKKK 66 308 - -
Vium8274g00008 635 SUPERFAMILY Protein kinase-like (PK-like) 66 309 IPR011009 -
Vium8274g00008 635 MobiDBLite consensus disorder prediction 423 454 - -
Vium8274g00008 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vium8274g00008 635 ProSiteProfiles Protein kinase domain profile. 67 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8274g00008 635 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 315 - -
Vium8274g00008 635 Coils Coil 586 606 - -
Vium8274g00008 635 MobiDBLite consensus disorder prediction 566 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8274g00008 Vium-Chr8274 45046 50954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8274g00008 1 635 MAP Kinase Kinase Kinase AT1G54960 54.167 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium8274g00008 Pkinase 2.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8274g00008 K20606 - gmx:100807537 1108.2