Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8270g00017 ATGTCTGCTGCTCTGGATATGACGCTCGACGATATTATCAAGAACAACAAGAAGTCAGCCTCCGCCAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGCCGTCTCCCCAACCGGGCCGCAAATCGCGCCGCGCCTTACGCCACCGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGCCAGCCGCCGCGGCTTTCGCAGGTCAAGGTGGTCGGGCTTCTTCCATCGAAACAGGGACGAAGCTTTACATATCTAATCTGGATTATGGCGTTTCCAATGACGATATTAAGGAGTTATTTCTTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTACGATAGGAGTGGAAGATCCAAGGGTACGGCAGAAGTAGTCTTCTCTCGACGTGCTGATGCTGTAGCTGCGGTGAAGAGGTACCACAATGTTCAGCTAGACGGGAAACCAATGAAGGTAGAGATTGTGGGGACAAATATCGCCACACATGCTGCAGCGCCCACTGTTAATGGGACTTTTGGAAATCCTGGTGGACCTCCCAGAAGTGGACAAGGGAGAAATGGGCCACTAGGAAGGCTGCGTGGTGCACCTAGAGGGCGAGGTGGCAGTCGGAGGGGTAGAGGACGTGGTAGAGGTCGTGATGAAAAGGTATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 735 0.5401 MSAALDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAANRAAPYATAKAPESAWQHDMYADQPAAAAFAGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAAPTVNGTFGNPGGPPRSGQGRNGPLGRLRGAPRGRGGSRRGRGRGRGRDEKVSAEDLDAELEKYHAEAMQLN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8270g00017 244 MobiDBLite consensus disorder prediction 215 237 - -
Vium8270g00017 244 Pfam C-terminal duplication domain of Friend of PRMT1 185 238 IPR025715 -
Vium8270g00017 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 242 - -
Vium8270g00017 244 SMART FoP_duplication_2 176 244 IPR025715 -
Vium8270g00017 244 Gene3D - 70 227 IPR012677 -
Vium8270g00017 244 MobiDBLite consensus disorder prediction 16 53 - -
Vium8270g00017 244 CDD RRM_THOC4 88 162 - -
Vium8270g00017 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Vium8270g00017 244 SMART rrm1_1 89 161 IPR000504 GO:0003723
Vium8270g00017 244 FunFam THO complex subunit 4 81 226 - -
Vium8270g00017 244 MobiDBLite consensus disorder prediction 174 244 - -
Vium8270g00017 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Vium8270g00017 244 Coils Coil 226 244 - -
Vium8270g00017 244 SUPERFAMILY RNA-binding domain, RBD 82 162 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8270g00017 Vium-Chr8270 43121 45625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8270g00017 87 162 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.96e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8270g00017 K12881 - gmx:100783362 340.502