Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8268g00005 ATGCCTGTTGATACATGGTGCCTGGTAGTGAATCTTGTGATTATTCATGGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTCAGCGATTATAGGCAATCTCTGCAGTTTCAGAATTTGAATTCAGAAAAACAAAACATACAATTGGAGGTTATTAGAGGTGGGAGAACAATTAAAATGTCGATATTTGATATTGTTGTTGGTGATGTCGTACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTTCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAATCACCATTTTTGATGTCTGGTTGCAAAGTAGCGGATGGAGTTGGTGTTATGCTGGTTACTGGCGTTGGTATTAATACCGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGACAATGGAGAAGAAACTCCGTTACAGGTACGCTTGAATGGAGTAGCAACCTTTATTGGTGTAGTTGGGCTTAGTGTAGCTGTTTTAGTGCTTGCCGTCCTCTTGGGCAGATACTTTTCCGGCCATACCAAAGATGTAGATGGACAAGTTGAATTTGTCGCCGGAAAGACTAGTGCCAGCAATGTAGTAGATGCGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCTGACAAGGCCTTGGTTAGGCGGCTATCCGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTAGTGGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCAGACGACTCATCAAAGTTGAATCCAAAAGCTTTGTCTCTGATAAATGAGGGCATTGCACAGAATACAACCGGAAATGTTTTTTTTCCCAAGGACGGTGGAGAGACAGAGGTGTCTGGATCTCCTACAGAAAAGGCAATTCTTTCATGGGCATTAAAGCTGGGAATGAATTTTGATGTTACCAGATCAAATTCAAAAGTTCTCCATGTGTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTTTGAAGCTGGGGGGTTCTGAAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAGCATGCACTCAATATCTTGATTCAGATGGTCAAATGCAATCCATTGAAGAGAAGAAGGCTTTTTTCAGGCAATCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTAGCTATTGCATACAGGTCATATGAACTAGACAAAGTTCCATCTAGTGAGCAGGACTTAGACCAATGGTCCTTACCGGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTAAAACTGTGCTCTGATGCCGGTGTTAAGGTACGCATGGTTACCGGGGACAACCTCCAAACAGCTAAGGCAATAGCTTTAGAGTGTGGAATACTGGCTTCAAGTGAAGAAGCCGTTGAGCCAACTATAATTGAAGGAAAGAAATTCCGTGAACTATCTGAAAAGGAAAGAGAAGATTGTGCCAAGAAAATAACTGTCATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCCCTACGTAAAGGAGGGGAAGTTGTTGCTGTCACAGGAGACGGCACCAATGATGCTCCTGCACTTCATGAGGCAGACATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGTTCAGATATTATAATCCTAGATGATAACTTTGCATCAGTAGTAAAGGTTGTCCGCTGGGGGCGCTCTGTATATGCAAATATTCAAAAATTTATTCAGTTCCAGCTTACAGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCCATAACTTCTGGTGATGTTCCTCTAAATGCAGTACAACTTTTGTGGGTCAACCTTATCATGGATACACTTGGGGCGCTTGCACTGGCTACTGAACCGCCAACAGACAGCCTAATGCGCAGATCACCAGTTGGCCGAAGAGAACCTCTTATAACAAATATCATGTGGAGAAACCTGATTGTACAGGCTGTCTATCAAATCACAGTTCTTCTCGTTCTTAACTTCCATGGTGAAAGTATTCTACCCAAACAAGATACTAGAGCTGATTCCTTTCAAGTAAAGAATACTTTAATTTTCAACGCGTTCGTCCTGTGCCAATTATTCAATGAATTCAATGCTCGGAAACCCGAGGAAATGAATGTTTTCCGTGGGGTGACAAAGAACAAACTTTTCATGGGAATTGTTGGAGCAACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCAACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTGTTATTGGCTTTGTCAGCTGGCCCCTTGCTATAGCTGGAAAATTCATTCCAGTTCCAAAAACACCATTGGCTCGTTACTTCAAGAAGCCACTAAGGAGATTAAGAAGGTCTAGATCTCGTGCTGCATAA 2634 0.4256 MPVDTWCLVVNLVIIHGLAEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNSEKQNIQLEVIRGGRTIKMSIFDIVVGDVVPLKIGDQVPADGVLITGHSLSIDESSMTGESKIVHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGVVGLSVAVLVLAVLLGRYFSGHTKDVDGQVEFVAGKTSASNVVDAVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGSTKVNPPDDSSKLNPKALSLINEGIAQNTTGNVFFPKDGGETEVSGSPTEKAILSWALKLGMNFDVTRSNSKVLHVFPFNSEKKRGGVALKLGGSEVHIHWKGAAEIVLGACTQYLDSDGQMQSIEEKKAFFRQSIDDMAARSLRCVAIAYRSYELDKVPSSEQDLDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKLCSDAGVKVRMVTGDNLQTAKAIALECGILASSEEAVEPTIIEGKKFRELSEKEREDCAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRSPVGRREPLITNIMWRNLIVQAVYQITVLLVLNFHGESILPKQDTRADSFQVKNTLIFNAFVLCQLFNEFNARKPEEMNVFRGVTKNKLFMGIVGATFILQIIIIEFLGKFTSTVRLDWKLWLASLVIGFVSWPLAIAGKFIPVPKTPLARYFKKPLRRLRRSRSRAA 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8268g00005 877 Gene3D - 293 490 IPR023299 GO:0000166
Vium8268g00005 877 NCBIfam calcium-translocating P-type ATPase, PMCA-type 19 853 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium8268g00005 877 Pfam haloacid dehalogenase-like hydrolase 280 604 - -
Vium8268g00005 877 Gene3D - 280 635 IPR023214 -
Vium8268g00005 877 PRINTS Sodium/potassium-transporting ATPase signature 26 46 - -
Vium8268g00005 877 PRINTS Sodium/potassium-transporting ATPase signature 402 420 - -
Vium8268g00005 877 PRINTS Sodium/potassium-transporting ATPase signature 276 297 - -
Vium8268g00005 877 SFLD p-type atpase 265 642 IPR044492 -
Vium8268g00005 877 SUPERFAMILY Calcium ATPase, transduction domain A 61 156 IPR008250 -
Vium8268g00005 877 ProSitePatterns E1-E2 ATPases phosphorylation site. 285 291 IPR018303 -
Vium8268g00005 877 FunFam Calcium-transporting ATPase 607 855 - -
Vium8268g00005 877 FunFam Calcium-transporting ATPase 483 635 - -
Vium8268g00005 877 Pfam Cation transporting ATPase, C-terminus 675 850 IPR006068 -
Vium8268g00005 877 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 853 IPR023298 -
Vium8268g00005 877 FunFam Calcium-transporting ATPase 293 490 - -
Vium8268g00005 877 SFLD Haloacid Dehalogenase 265 642 - -
Vium8268g00005 877 FunFam Calcium-transporting ATPase 39 159 - -
Vium8268g00005 877 NCBIfam HAD-IC family P-type ATPase 223 313 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8268g00005 877 NCBIfam HAD-IC family P-type ATPase 557 671 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 107 121 - -
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Vium8268g00005 877 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Vium8268g00005 877 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 290 487 IPR023299 GO:0000166
Vium8268g00005 877 SUPERFAMILY HAD-like 281 695 IPR036412 -
Vium8268g00005 877 Gene3D - 47 159 - -
Vium8268g00005 877 Gene3D - 20 841 - -
Vium8268g00005 877 PANTHER CATION TRANSPORTING ATPASE 7 853 - -
Vium8268g00005 877 Pfam E1-E2 ATPase 60 261 - -
Vium8268g00005 877 FunFam Calcium-transporting ATPase 9 plasma membrane-type 137 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8268g00005 Vium-Chr8268 16016 31233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8268g00005 16 874 Primary Pumps ATPases AT3G21180 80.000 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8268g00005 K01537 - gmx:100777143 1529.61