Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8259g00011 ATGAAGGCCGTGCCCCTACCCTTTCAGGAATTTAGAGGGAACGGGGTGTTAGATTTTGCTTCTGGTGCTGTTGCTGTTTCAGATTCGCTGTTACTCCCACAGCAAGAGCAATTTCTGCAAAGGTGGAATCCCCACAGGGAAAACTATTGCTATGTGGGCATTGAGCCCACTTCTGGTTTGGACCTCAAAAGGAAAACAAGCCCTCCTACATCCTCCTCTACACTGTCTTCCTCACGCGGCAGCAGCGGCTGCGGTGGAGGTTGCGGCTCGACCGATAGCACCACCGGCGCTGGAGCAGCGAAGGTCTCGACTGAGAAGGAGAACAACCCACCTCAAGCAGGGTTAGAGGTTGGACAGGGAAGATGTGGACTGGGAATGGAGGATTGGGAGAGTGTGTTGTCTGAGTCATCTGCTCAAGATAATTCCATTTTGAAATTGATTATGGGGGACATTGAGGACCCTTCTATGGGCCTGACCAAGCTTTTGCAGGGTGGAAGCGCCTCTCAGGATGTTGAATTCAATGGGGTTGGAGTGGGTTTTAGTTTGGTGGATCAAAGTTCTGTGCTTGATCCCATTCCCAGTGTCAACTTTGTGAGCAGCATTGATCCCTCTGGTCCTGGGAATTGTTCCGACTTCCCTTTTAATTCCCATAGTAATGTTAACTCCAATATTTCCAGAGTTGGTTCTGGTGTGAATCCGCCTAACCATGGGTTTCCTGATTCAGCTAGCAATCTCTCACCAGTTTCACTCTCTCAGGGTGTTTTTCAGCCACAACAACAGCATCCAGCAATAGAGCCTCTTGATGAGAAGCTGCAAGTTCTCAATCCCCAATTTATTTTGAACCAAAATCAAGCTCAGTTTATGGCAAACCCAGGTTCGGTTTTGCCTTTGAATTATGCTCAGTTGCAAGAACATCATCAGCTTCTCCCACAGCCTCCGGCAAAACGCCTGAATTGTGGCCCAAATTATCAGGTTCCTAAGGCACCCTTTTTGGACTCTGGCCAAGAGCTGTTACTACGGAGGCAGCAACAGCAGCTTCAACTGCTTCCTCACCATCTGCTGCAGAGGTCATCCATGCTGGTGGCCCCAAAGCAGAAAATGGCGAGCCCCAGCGGTGAAGATTTGGCAACCCACCAGCTTCAACAGGCTATAACTGAACAGCTTTTCAAGGCTGCAGAGCTGATCGATGCCGGTAATCTGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCCCCCTTTGGGAGGCCTTTTCAGAGGGCTGCTTTTTATTTCAAAGAGGCCTTGCAATTAGGACTTCATTCAAATGCCAACAACAGTTCTATGACCTTCTCACCCACAGGCCTTCTGCTCAAAATTGGTGCTTACAAATCATTCTCAGAAATCTCACCAGTTCTGCAATTCGCCAATTTCACTTGTAATCAAGCACTGCTTGAAGCTGTGGAAGGGTTTGATCGCATTCACATAATTGATTTTGATATTGGGTTTGGTGGACAGTGGTCTTCTTTCATGCAAGAGTTAGCACTGAGAAACGGAGGTGCTCCTGAACTCAGGATCACAGCATTTGTGTCACCCTCCCACTATGATGAAATTGAGCTCAGTTTCACTCGGGAGAATTTGAAGCAATATGCTGGCGAGATAAACATGTCCTTTGAGCTTGAGATTTTGAGCTTTGAATCTTTAAATTCTGCTTCATGGCCCCAGCCACTTCGTGATTGCGAAGCTGTGGTGGTTAACATGCCTATTGGCTCATTCTCAAGCTACCCATCATATCTTCCTTTGGCCCTTCGCTTTGTGAAGCAGCTCATGCCAAAAGTTGTGGTTACATTGGATAGAAGTTGCGATCGAACTGATGCACCATTTCCTCAGCATCTGAATTTTGCACTTCAATCTTATTCGGGGCTGCTTGAATCACTTGATGCTGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAGAAATATTATCTTCAACCAGCAATGGAGAAGCTTGTTTTGGGTCGACATGGTTTTAAGGAAAGAACACTTTCTTGGAAAAACCTTCTCTTGTCATCTGGGTTTTCACCATTGACCTTCAGTAACTTTACAGAATCTCAAGCAGAGTGTTTGGTGCAGAGGACTCCAGGTAAGGGATTTCATGTAGAGAAAAGACAGTCTTCCCTGGTTCTTTGCTGGCAAAGGAAGGATCTCATCTCAGTTTCAACCTGGAGATGCTGA 2226 0.4695 MKAVPLPFQEFRGNGVLDFASGAVAVSDSLLLPQQEQFLQRWNPHRENYCYVGIEPTSGLDLKRKTSPPTSSSTLSSSRGSSGCGGGCGSTDSTTGAGAAKVSTEKENNPPQAGLEVGQGRCGLGMEDWESVLSESSAQDNSILKLIMGDIEDPSMGLTKLLQGGSASQDVEFNGVGVGFSLVDQSSVLDPIPSVNFVSSIDPSGPGNCSDFPFNSHSNVNSNISRVGSGVNPPNHGFPDSASNLSPVSLSQGVFQPQQQHPAIEPLDEKLQVLNPQFILNQNQAQFMANPGSVLPLNYAQLQEHHQLLPQPPAKRLNCGPNYQVPKAPFLDSGQELLLRRQQQQLQLLPHHLLQRSSMLVAPKQKMASPSGEDLATHQLQQAITEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHSNANNSSMTFSPTGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSASWPQPLRDCEAVVVNMPIGSFSSYPSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLDAVNVHPDVLQMIEKYYLQPAMEKLVLGRHGFKERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWRC 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8259g00011 741 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 351 736 IPR005202 -
Vium8259g00011 741 MobiDBLite consensus disorder prediction 63 110 - -
Vium8259g00011 741 Pfam GRAS domain family 385 740 IPR005202 -
Vium8259g00011 741 MobiDBLite consensus disorder prediction 60 120 - -
Vium8259g00011 741 ProSiteProfiles GRAS family profile. 375 740 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8259g00011 Vium-Chr8259 79586 82745 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8259g00011 384 741 GRAS Transcription Factor Family AT4G00150 59.003 1.59e-139 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium8259g00011 GRAS 5.5e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8259g00011 - - gmx:100805945 1219.14