Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8250g00011 ATGATGATTCTCGTGAGAAAACCCCATTTGGGGTTGCTTCTCTTTCTTATCCACCTTCACTTCAGCTCCTGTTACTCCACAGAACCTATGAACTGTACGGACACAGGTCGCGTTTGCACTTCTTTCATTGCCTTCAAGCCTGAGCCAAACCAAACGCTTGCTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTTGAAGGCAATGCGTGGGGTTACGTGTTCATAAGGAAGAATTGTTCTTGTGCTGCGGGTATCAAGAAATACTTGTCCAATACCACGTTCACTGTGAAATCCAATGAGGGATTAGTGTATGACGTGGTGATGAGTGCCTATGATGGCCTTGCTGTCCTTCCCAACACAACCAGGAGGGCCAGGAATGGTGCTGTTGTCTCTCTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTCTGGAACTATTTGGTCAGTTATGTGATGAGAGACGGGGATAGTATTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATTGAGAGTGTGAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCGCTTTATTACATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTGAATAATACTGCTCCACCAGTTCCTGTTCCTGCTCCATCCTTTGATAATTTTTCAGCTGATCAAGTTGACCACAAGGCTCATGTACCCTACGTATGGATCATTGGGGGCTTAGGAGTTGGTCTAATTCTAATTGTATTAACTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTAATGAGAAAGATGCCGAGGGCAAAATTTCTCATAAATTCCATATTCTAAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAGCATGTTGAACAGAAGCAAACAGATGCTGAATCCAGCAATCACACGATTACCATTCCAAAAGCCTCAACTCTTGGGCCTGATGTATTTGAAATGGATAAGCCTGTTGTCTTTACATATGAAGAGATTTTCTCCACATCTGATGGTTTCTCTGACTCAAATCTACTTGGACATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCTAGTCACGAGGAGCTTTTCTTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTGCAAATTGCGCTTGATGCTGCCAGGGGCCTTGAATACATACACGAGCACACAAAAGCTCATTATGTACACCGTGATATCAAGACCAGTAACATATTACTTGATGCTTCTTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGATCTGAAGGCACAACAACAAAAAATCCTGAAAGGCGTTCATTGGCATCTATAATGCTGGGTGTTCTCAGGAATTCACCTGACTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGCTGGCCACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTAGTGATTTCCCTCTCACAGATTCTTCTGTCTTCTGTTGAATGGGAAGCAACTCTTGCTGGAAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1995 0.4216 MMILVRKPHLGLLLFLIHLHFSSCYSTEPMNCTDTGRVCTSFIAFKPEPNQTLALIQSMFDVLPGDITVEGNAWGYVFIRKNCSCAAGIKKYLSNTTFTVKSNEGLVYDVVMSAYDGLAVLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSIESLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNTAPPVPVPAPSFDNFSADQVDHKAHVPYVWIIGGLGVGLILIVLTVILCVCMRSSNCFADDARTNEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDAESSNHTITIPKASTLGPDVFEMDKPVVFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQSKGHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSEGLATTKSDVYAFGVVLFEIISGKEAIIRSEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKLATLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8250g00011 664 ProSiteProfiles Protein kinase domain profile. 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8250g00011 664 Pfam LysM domain 153 190 IPR018392 -
Vium8250g00011 664 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Vium8250g00011 664 FunFam PTI1-like tyrosine-protein kinase 3 426 650 - -
Vium8250g00011 664 FunFam Kinase family protein 329 425 - -
Vium8250g00011 664 Pfam Protein tyrosine and serine/threonine kinase 358 634 IPR001245 GO:0004672|GO:0006468
Vium8250g00011 664 SUPERFAMILY Protein kinase-like (PK-like) 332 636 IPR011009 -
Vium8250g00011 664 Gene3D Transferase(Phosphotransferase) domain 1 427 651 - -
Vium8250g00011 664 Gene3D Phosphorylase Kinase; domain 1 329 425 - -
Vium8250g00011 664 SMART LysM_2 152 196 IPR018392 -
Vium8250g00011 664 SMART serkin_6 354 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8250g00011 664 Gene3D LysM domain 148 201 IPR036779 -
Vium8250g00011 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Vium8250g00011 664 ProSiteProfiles LysM domain profile. 151 195 IPR018392 -
Vium8250g00011 664 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 51 658 IPR044812 GO:0019199|GO:0045087
Vium8250g00011 664 SUPERFAMILY LysM domain 151 196 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8250g00011 Vium-Chr8250 64087 71026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8250g00011 28 664 Receptor kinase-like Gene Family AT1G51940 69.922 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium8250g00011 PK_Tyr_Ser-Thr 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8250g00011 - - gmx:100796989 1194.87