Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8250g00010 ATGATGATTCTCGTGAGAAAACCCCATTTGGGGTTGCTTCTCTTTCTTATCCACCTTCACTTCAGCTCCTGTTACTCCACAGAACCTATGAACTGTACGGACACAGGTCGCGTTTGCACTTCTTTCATTGCCTTCAAGCCTGAGCCAAACCAAACGCTTGCTCTGATTCAGAGCATGTTTGATGTGTTGCCTGGTGACATCACAGTTGAAGGCAATGCGTGGGGTTACGTGTTCATAAGGAAGAATTGTTCTTGTGCTGCGGGTATCAAGAAATACTTGTCCAATACCACGTTCACTGTGAAATCCAATGAGGGATTAGTGTATGACGTGGTGATGAGTGCCTATGATGGCCTTGCTGTCCTTCCCAACACAACCAGGAGGGCCAGGAATGGTGCTGTTGTCTCTCTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTCTGGAACTATTTGGTCAGTTATGTGATGAGAGACGGGGATAGTATTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATTGAGAGTGTGAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCGCTTTATTACATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTGAATAATACTGCTCCACCAGTTCCTGTTCCTGCTCCATCCTTTGATAATTTTTCAGCTGATCAAGTTGACCACAAGGCTCATGTACCCTACGTATGGATCATTGGGGGCTTAGGAGTTGGTCTAATTCTAATTGTATTAACTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTAATGAGAAAGATGCCGAGGGCAAAATTTCTCATAAATTCCATATTCTAAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAGCATGTTGAACAGAAGCAAACAGATGCTGAATCCAGCAATCACACGATTACCATTCCAAAAGCCTCAACTCTTGGGCCTGATGTATTTGAAATGGATAAGCCTGTTGTCTTTACATATGAAGAGATTTTCTCCACATCTGATGGTTTCTCTGACTCAAATCTACTTGGACATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAGATGAAAGTTTTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCTAGTCACGAGGAGCTTTTCTTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAGTCATTCCCCACTTTCTTGGATCATGAGGGTGCAAATTGCGCTTGATGCTGCCAGGGGCCTTGAATACATACACGAGCACACAAAAGCTCATTATGTACACCGTGATATCAAGACCAGTAACATATTACTTGATGCTTCTTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAACTAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGATCTGAAGGCACAACAACAAAAAATCCTGAAAGGCGTTCATTGGCATCTATAATGCTGGGTGTTCTCAGGAATTCACCTGACTCCATGAGCATGTCAAGCTTGAGAGATTATATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGCTGGCCACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTAGTGATTTCCCTCTCACAGATTCTTCTGTCTTCTGTTGAATGGGAAGCAACTCTTGCTGGAAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1989 0.4213 MMILVRKPHLGLLLFLIHLHFSSCYSTEPMNCTDTGRVCTSFIAFKPEPNQTLALIQSMFDVLPGDITVEGNAWGYVFIRKNCSCAAGIKKYLSNTTFTVKSNEGLVYDVVMSAYDGLAVLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSIESLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNTAPPVPVPAPSFDNFSADQVDHKAHVPYVWIIGGLGVGLILIVLTVILCVCMRSSNCFADDARTNEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDAESSNHTITIPKASTLGPDVFEMDKPVVFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASHEELFLVYEYAQKGSLRSHLHDPQSHSPLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSEGLATTKSDVYAFGVVLFEIISGKEAIIRSEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKLATLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8250g00010 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vium8250g00010 662 Pfam LysM domain 153 190 IPR018392 -
Vium8250g00010 662 Gene3D Transferase(Phosphotransferase) domain 1 427 649 - -
Vium8250g00010 662 SMART serkin_6 354 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8250g00010 662 Gene3D LysM domain 148 201 IPR036779 -
Vium8250g00010 662 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Vium8250g00010 662 FunFam Kinase family protein 329 425 - -
Vium8250g00010 662 Gene3D Phosphorylase Kinase; domain 1 329 425 - -
Vium8250g00010 662 FunFam PTI1-like tyrosine-protein kinase 3 426 648 - -
Vium8250g00010 662 SMART LysM_2 152 196 IPR018392 -
Vium8250g00010 662 SUPERFAMILY Protein kinase-like (PK-like) 332 634 IPR011009 -
Vium8250g00010 662 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 51 656 IPR044812 GO:0019199|GO:0045087
Vium8250g00010 662 Pfam Protein tyrosine and serine/threonine kinase 358 632 IPR001245 GO:0004672|GO:0006468
Vium8250g00010 662 ProSiteProfiles LysM domain profile. 151 195 IPR018392 -
Vium8250g00010 662 SUPERFAMILY LysM domain 151 196 IPR036779 -
Vium8250g00010 662 ProSiteProfiles Protein kinase domain profile. 354 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8250g00010 Vium-Chr8250 64085 71026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8250g00010 28 662 Receptor kinase-like Gene Family AT1G51940 69.612 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium8250g00010 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8250g00010 - - gmx:100796989 1185.63