Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8250g00009 ATGTGGCAAAGAAGCCACGGGTCTTCGGAGGAGAGGAAACTGGAGCTCAGGCTTGGTCCACCTAGTGAAGATTCTCTCAATGAAAGCATCAAAAAATGCATCACAGAAAGAAACGAATCACCACTTTCTCTTGGTTACTTCTCAACTCACGAAATTTCCGCTTCTGACAAACCAGGTCCAGGTGGGGCTATGGTGCCCACTGCATGGAGTTCCGCATCTTACCACCAACACCAAGCTAAACCATCATATTTTCAACTCCAATCAAGGCCACAAAACGTGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGACATTCTCACCCTCTTCTGCAGAAGCAGCCGTGTCCACAAGAACTGCTTCGGGTGCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCATACTGGGTCCCAACAATATCAACATTTTGTTCCAGACAACGTTGCTAGCCAAAAACCTACTCACAACTGTGGCAAAGGCTTGTTTGTAAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTTGCAGAGATGAAGTTGTCTCATATTGCCTCTTCCCACTGTTGTTCTGCACAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGCCAATACAAGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAAAGTTCTGATCTTCCTGCATTTACACTAGTAAGCAATAGTCACACTACTTGA 939 0.4388 MWQRSHGSSEERKLELRLGPPSEDSLNESIKKCITERNESPLSLGYFSTHEISASDKPGPGGAMVPTAWSSASYHQHQAKPSYFQLQSRPQNVLMMRKEVPQLCCVENKTFSPSSAEAAVSTRTASGAVVGWPPIRSFRKNIASGSSSKLHTGSQQYQHFVPDNVASQKPTHNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCCSAQRDSCAGGIQNKGEEEKEKANTSFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLVSNSHTT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8250g00009 312 ProSiteProfiles PB1 domain profile. 177 297 IPR000270 GO:0005515
Vium8250g00009 312 MobiDBLite consensus disorder prediction 1 26 - -
Vium8250g00009 312 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 299 IPR003311 GO:0005634|GO:0006355
Vium8250g00009 312 FunFam Auxin-responsive protein 172 309 - -
Vium8250g00009 312 SUPERFAMILY CAD & PB1 domains 170 294 - -
Vium8250g00009 312 Gene3D - 172 309 - -
Vium8250g00009 312 MobiDBLite consensus disorder prediction 1 19 - -
Vium8250g00009 312 Pfam AUX/IAA family 14 300 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8250g00009 Vium-Chr8250 54063 57501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8250g00009 189 308 B3 DNA Binding Superfamily AT5G20730 24.167 3.31e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium8250g00009 AUX_IAA 1.4e-62 CL0072