Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8250g00008 ATGTGGCAAAGAAGCCACGGGTCTTCGGAGGAGAGGAAACTGGAGCTCAGGCTTGGTCCACCTAGTGAAGATTCTCTCAATGAAAGCATCAAAAAATGCATCACAGAAAGAAACGAATCACCACTTTCTCTTGGTTACTTCTCAACTCACGAAATTTCCGCTTCTGACAAACCAGGTCCAGGTGGGGCTATGGTGCCCACTGCATGGAGTTCCGCATCTTACCACCAACACCAAGCTAAACCATCATATTTTCAACTCCAATCAAGGCCACAAAACGTGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGACATTCTCACCCTCTTCTGCAGAAGCAGCCGTGTCCACAAGAACTGCTTCGGGTGCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCATACTGGGTCCCAACAATATCAACATTTTGTTCCAGACAACGTTGCTAGCCAAAAACCTACTCACAACTGTGGCAAAGGCTTGTTTGTAAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTTGCAGAGATGAAGTTGTCTCATATTGCCTCTTCCCACTGTTGTTCTGCACAAAGAGATTCCTGTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGCCAATACAAGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAAAGTTCTGATCTTCCTGCATTTACACTTAGTAGTAAGCAATAG 930 0.4387 MWQRSHGSSEERKLELRLGPPSEDSLNESIKKCITERNESPLSLGYFSTHEISASDKPGPGGAMVPTAWSSASYHQHQAKPSYFQLQSRPQNVLMMRKEVPQLCCVENKTFSPSSAEAAVSTRTASGAVVGWPPIRSFRKNIASGSSSKLHTGSQQYQHFVPDNVASQKPTHNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCCSAQRDSCAGGIQNKGEEEKEKANTSFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFTLSSKQ 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8250g00008 309 ProSiteProfiles PB1 domain profile. 177 297 IPR000270 GO:0005515
Vium8250g00008 309 MobiDBLite consensus disorder prediction 1 26 - -
Vium8250g00008 309 Pfam AUX/IAA family 14 300 IPR033389 -
Vium8250g00008 309 Gene3D - 172 308 - -
Vium8250g00008 309 SUPERFAMILY CAD & PB1 domains 170 294 - -
Vium8250g00008 309 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 299 IPR003311 GO:0005634|GO:0006355
Vium8250g00008 309 MobiDBLite consensus disorder prediction 1 19 - -
Vium8250g00008 309 FunFam Auxin-responsive protein 172 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8250g00008 Vium-Chr8250 54063 57501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8250g00008 189 305 B3 DNA Binding Superfamily AT5G20730 23.932 6.57e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium8250g00008 AUX_IAA 1.3e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8250g00008 K14484 - gmx:100793822 468.774