Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8250g00002 ATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGATCACAGCGACAATTCAGGCTCGCTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCAAGGGAAGGATGTGCCATCTTCGGTTCCTGCCACTGATAACACCTGGCTCAGATCCTACATTGCTGATACAGAGAATGAGCAGAATAAACATGCAATTGCCGTTGCCGCTGCCACTGCCGCCGCCGCCGATGCTGCCGTGGCTGCCGCTCAGGCTGCCGTGGCGGTTGTGAGGCTGACAAGCCAGGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCCGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTATTAGAGGGTACTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTCAGATCACAGCGAGCTCGTCGTTCCTTGAGCAAAGAAAGCAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATCACACAGTAAAAGGCTACCTACATCCTACGAAACATCCTTGAATGGTTTTGATGAGAGCCCGAAGATTGTTGAAATTGACACATACAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGTCAGGCAATGTCATCCCCTCTACCTTGTCATGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTACTTCAACGTTGATGAGTGTAGATTCCCCACTGCTCATAGCACACCACGTTTCACAAACTATGCTCGTCCCAATGCTCCAGCCACACCAGCCAAGAGTGTTTGTGGAGACACCTTCTTCAGACCTTGTTCAAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAACAAAGACCAGAACCCAAGAAAAGGCTCTCACTCAATGAAGTGATGGCAGCAAGAAACAGCATAAGTAGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGACTCCTGGAATTTTTGA 1188 0.4756 MGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKQGKDVPSSVPATDNTWLRSYIADTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALIRGYLVRKRAAATLHSMQALIRAQTAVRSQRARRSLSKESRFLPEVLARKSVERFDETRSESHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCQAMSSPLPCHVPGRISVPDCRHLQDFDWYFNVDECRFPTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQDSWNF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8250g00002 395 SMART iq_5 113 135 IPR000048 GO:0005515
Vium8250g00002 395 SMART iq_5 136 157 IPR000048 GO:0005515
Vium8250g00002 395 PANTHER IQ-DOMAIN 5-RELATED 1 365 - -
Vium8250g00002 395 Gene3D - 56 140 - -
Vium8250g00002 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vium8250g00002 395 Pfam Protein of unknown function (DUF4005) 302 376 IPR025064 -
Vium8250g00002 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Vium8250g00002 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vium8250g00002 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Vium8250g00002 395 MobiDBLite consensus disorder prediction 1 51 - -
Vium8250g00002 395 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8250g00002 Vium-Chr8250 24530 27346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8250g00002 1 379 IQD Protein Family AT3G16490 56.489 5.10e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8250g00002 - - gmx:100797686 687.567