Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8249g00001 ATGTTCGCGGCGTCTCCGCCACCCTCGGCCGCCGCTACCACCGCCGGCGTTGGTCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTCGCCTCCTACGCCTGCGTCCGCTTCAAATCAAACTCTCCTCGCACTCGCAACAACACTTATTACGACCAAACGGAACAGAATATCAGCGTTCACGATTCCGGTGGGCCCGAACTCGTCGTCCTGGGCCTGGAAAAGCCCGCCATCGAGGCCTACCCGAAGATCGTGGTAGGAGAGAGCGGCCGCCTCCCCAGGCCCAACGACAGCGGCTCCTGCGCCATCTGCCTCTGCGACTACCTTCCCAAGGACACCGTACGCTGCGTTCCGAGCTGCCACCACTGCTTTCACGCGGACTGCGTGGACGAGTGGCTGAAGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCCCCGGCGCCATCACCATCGCCGTCACCGACGCCGCTGGCGGAGCTCGTTCCGCTGGCTTTCCACGCCAGGTGA 531 0.6384 MFAASPPPSAAATTAGVGLGYGIAIAVSILVLISSIMLASYACVRFKSNSPRTRNNTYYDQTEQNISVHDSGGPELVVLGLEKPAIEAYPKIVVGESGRLPRPNDSGSCAICLCDYLPKDTVRCVPSCHHCFHADCVDEWLKMSATCPLCRNSPAPSPSPSPTPLAELVPLAFHAR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8249g00001 176 CDD RING-H2_EL5-like 108 151 - -
Vium8249g00001 176 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vium8249g00001 176 SMART ring_2 109 150 IPR001841 -
Vium8249g00001 176 SUPERFAMILY RING/U-box 108 159 - -
Vium8249g00001 176 PANTHER RING-H2 FINGER PROTEIN ATL67 9 174 IPR044289 GO:0016567|GO:0016740
Vium8249g00001 176 Pfam Ring finger domain 108 151 IPR001841 -
Vium8249g00001 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8249g00001 Vium-Chr8249 2482 3338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8249g00001 15 176 C3H Transcription Factor Family AT5G07040 60.494 1.88e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8249g00001 - - vra:106761828 324.709