Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8248g00002 ATGAGAGAGATGATTACATTCATGGACTCGAAAGAGAAATCGAAGGAGGCAGAAAAGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGCATGGTGCAGATGCCAGCAGTGAACAGCAAGGTCTATTACTTCCCCCAGGGCCATGCTGAACATGCATGCGGACCGGTTCACTTCAGGACCTGCCCCAAGGTTCGGCCTTTAGTTCCATGCAGAGTGACTGCCATCAAGTACATGGCTGATCCCGACACCGACGAGGTGTATGCAAAACTCAGGCTTGCTCCTTTGAGCGTCAACGAAGCTGATTATGACCGAGAAGTTGTTGGCCCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCGAGGTACTGTGCTGAGACAATTTTCCCTAGACTAGATTACTCGGCTGATCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCACGGGGAAACATGGAAATTCAGGCACATCTACAGGGGCACGCCGAGGCGGCATCTGTTGACAACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGAGACTCGATTGTGTTTTTGAGGGCAGAAAACGGAGATCTCTGCGTCGGGATTCGGCGAGCGAAGAAGGGGATTGGCGGGGGACTTGAGGGCTCCTCTGGCTGGAACCCTGCGGGAGGAAGCTGTCCTATGCCCTATGGTGGATTTTCACCTTTTCTGAGGGAGGATGACAACAGAATCCTGAGAAATGGTAACGGCAATGGGTTGAACCCAAGTGTGAGCATGACGGGCAGGGGCAAAGTGAGACCAGAAGCTGTAGTTGAAGCTGCAAATCTCGCGGCCAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGGGCATGTACTCCTGAATTTTGTGTGAAGGCTCCACTGGTAGAAGCAGCACTGCAGATTAGGTGGTGCTCTGGTATAAGGTTCAAGATGGCCTTCGAAACGGAGGACTCCTCACGGATAAGTTGGTTCATGGGAACCATATCGTCAGTTCAGGTTGCCGATCCCCTTAACTGGCCTAACTCACCTTGGAGACTTCTCCAGGTGACATGGGATGAGCCGGATTTACTTCAAAACGTGAGAAGGGTGAGTCCATGGCTGGTTGAGTTGGTGTCAAACATGCCTGCCATTCATCTTTCTCCATTCTCACCACCAAGGAAGAAATTGAGATTGCCTCAACACCCAGATTTCCCCCTTGAAGGGCAGATTCCTTTGCCAACATTTTCAGGAAATCTTCTTGGTCCCAGCAACACCAATCAGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGGTCACTATGGTCTTCCCATATCGGATCTCCACTTCAGCAAACTACATTCAGGTCTCTTTCCTGCTGGTTTCCCGCCTATTGATCACGCTGCTACGCCAATGAGAATCTCTAATAACCAGCCATTGCAAAAGCCCAGCATCAGTGAGAACGTCTCTTGCTTATTGTCTATGGCAAATTCTACTCCATCTTCAAAGAAGACGGCCGAGGGGAAGACACCCCAGCTCGTGCTTTTCGGCCAGAGAATTCTCACCGAGCAGCAGATATCTCTCAGCAGCTCCGTTGACACATTCTCCCCAGTTCTTACCAAAAATTGTTGCTCCGATGGACATGCAGATAAAGTACCTAATATTTCTGATTGTTCTGGATCGGCTCTTCATCAGCAGCAAGGCCTACAGGAACAACGTTCCTCTTGTGAGAGGTTTCAATGGTACAAAGATAACCCCCAAGAAACTGAGGCCGGTCTGGAGGCTGGTCATTGCAAAGTTTTCATGGAGTCAGAAGATGTAGGCAGGACTATGGACCTCTCGTTGCTTCGGTCCTATGATGAACTGTACAGAAGGTTGGCAGACATGTTTGGCATAGAAAAATCTGAGATGTTAAGTCAGGTGCTCTATCGCGATTCTAATGGAGCTGTCAAACACATTGGTGATGAACCATTGAGTGACTTCATAAAATCAGCCAGGAGGTTGACTATTCTAACGGATTCTGGCAGCAACAATGTAGGAGTGTAG 2115 0.4917 MREMITFMDSKEKSKEAEKCLDPQLWHACAGGMVQMPAVNSKVYYFPQGHAEHACGPVHFRTCPKVRPLVPCRVTAIKYMADPDTDEVYAKLRLAPLSVNEADYDREVVGPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGLEGSSGWNPAGGSCPMPYGGFSPFLREDDNRILRNGNGNGLNPSVSMTGRGKVRPEAVVEAANLAANKQPFEVVYYPRACTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLEGQIPLPTFSGNLLGPSNTNQFGCLPESTPAGMQGARHGHYGLPISDLHFSKLHSGLFPAGFPPIDHAATPMRISNNQPLQKPSISENVSCLLSMANSTPSSKKTAEGKTPQLVLFGQRILTEQQISLSSSVDTFSPVLTKNCCSDGHADKVPNISDCSGSALHQQQGLQEQRSSCERFQWYKDNPQETEAGLEAGHCKVFMESEDVGRTMDLSLLRSYDELYRRLADMFGIEKSEMLSQVLYRDSNGAVKHIGDEPLSDFIKSARRLTILTDSGSNNVGV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8248g00002 704 Gene3D - 326 400 - -
Vium8248g00002 704 SMART B3_2 120 222 IPR003340 GO:0003677
Vium8248g00002 704 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Vium8248g00002 704 CDD B3_DNA 119 220 IPR003340 GO:0003677
Vium8248g00002 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 697 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium8248g00002 704 FunFam Auxin response factor 118 222 - -
Vium8248g00002 704 Pfam Auxin response factor 289 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium8248g00002 704 SUPERFAMILY DNA-binding pseudobarrel domain 114 221 IPR015300 -
Vium8248g00002 704 Gene3D - 617 702 - -
Vium8248g00002 704 Gene3D - 118 222 IPR015300 -
Vium8248g00002 704 FunFam Auxin response factor 327 400 - -
Vium8248g00002 704 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Vium8248g00002 704 ProSiteProfiles PB1 domain profile. 618 698 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8248g00002 Vium-Chr8248 5006 8927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8248g00002 17 704 B3 DNA Binding Superfamily AT4G30080 57.000 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium8248g00002 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8248g00002 - - gmx:100796522 1204.89