LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium823g00016	ATGGCTTTCAAATGTCACAGCAACCAGTGCAAGATTGCAGCTTTTGATGTTGTTATCTTGGCAGTGGCCACCCTCTTGTGTTTCTCACATTCAGCAGTGTCTGATCCAAGAATCTCTGAAGTGGGGTTGTACTGTGGCACTCACAGAGCATCACCAAGTGGTAACTATGTCCCTGTTTTCACCAAAGAAATGGGAAGGCTTCAAGAGCTTGTGAGCAAAAACAACTGGGGCACTCATTCTGAGGAACCGTCATCAACCTCTCCGATCTATGGTTTGGCACAGTGCTTCCAAGATCTTTCCAATATTGATTGTCTTCAGTGCTTTGCAGCCAGTCGCACCAAGCTTCCTCGCTGCGTGCCTTCCGTTTCTGGTCACATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACTCTGAGGACACTGACCCTTTGAGGGATACAGTGAACTGCACCACACAGTATGGTGGTGTGGCTGGTGAGGCTGAGGTGGTGTTTGGCAAGAGTGTTGGGAAAGTGGTTGAGAATGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCTTTGGCACAGTGCTGGAAAACTGTTGGAGAAAAAGGGTGTGGTGATTGCTTGAAGAAAGCTGGAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCCACTGTTAAGTTCTACAATCAAGGAGGTGAACATGGTGATGGAGATGATTCTTCTAGAAAAAGAACCATCATTACAGCAGTCTCAGTCTTGGCTGCAGTTGTTGTAGTTCTCTCTCTCTTAGTCTCCTATGTGGCCTTCACCAAAAAGAGAAAAAAAAAGGACTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACGGATTATTTTAGCACTCCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTGTTCAAAGGGACTCTCCCAAACGGGAAAGATGTTGCTGTTAAGAGATTGATCTTCAATAATAGACAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGCGGAATAAATCACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAATACCTACCTAACAAGAGCTTAGACCATTTCATTTTTGAAAAGGACAAAACAAGGATTCTAAAATGGAAGCAGAGGTTTGAAATAATTGTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATAATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAACCCCAAGATTGCAGATTTTGGTCTTGCAAGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTGTGA	1479	0.4334	MAFKCHSNQCKIAAFDVVILAVATLLCFSHSAVSDPRISEVGLYCGTHRASPSGNYVPVFTKEMGRLQELVSKNNWGTHSEEPSSTSPIYGLAQCFQDLSNIDCLQCFAASRTKLPRCVPSVSGHIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTTQYGGVAGEAEVVFGKSVGKVVENVVRVAVNEGRGFAVGEGEGVYALAQCWKTVGEKGCGDCLKKAGNEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEHGDGDDSSRKRTIITAVSVLAAVVVVLSLLVSYVAFTKKRKKKDFIEIPSYLKNSSLNYKYETLEKATDYFSTPRKIGQGGAGSVFKGTLPNGKDVAVKRLIFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFIFEKDKTRILKWKQRFEIIVGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTL	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium823g00016	492	ProSiteProfiles	Gnk2-homologous domain profile.	38	140	IPR002902	-
	Vium823g00016	492	SMART	serkin_6	327	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium823g00016	492	FunFam	Cysteine-rich receptor-like protein kinase 2	293	402	-	-
	Vium823g00016	492	ProSiteProfiles	Gnk2-homologous domain profile.	149	250	IPR002902	-
	Vium823g00016	492	ProSiteProfiles	Protein kinase domain profile.	327	492	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium823g00016	492	Gene3D	Phosphorylase Kinase; domain 1	287	402	-	-
	Vium823g00016	492	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	492	-	-
	Vium823g00016	492	SUPERFAMILY	Protein kinase-like (PK-like)	309	491	IPR011009	-
	Vium823g00016	492	FunFam	Cysteine-rich receptor-like protein kinase 3	150	250	-	-
	Vium823g00016	492	Gene3D	Transferase(Phosphotransferase) domain 1	403	492	-	-
	Vium823g00016	492	Pfam	Salt stress response/antifungal	165	247	IPR002902	-
	Vium823g00016	492	Pfam	Salt stress response/antifungal	75	138	IPR002902	-
	Vium823g00016	492	Pfam	Protein kinase domain	329	482	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium823g00016	492	Gene3D	-	40	140	IPR038408	-
	Vium823g00016	492	Gene3D	-	154	250	IPR038408	-
	Vium823g00016	492	FunFam	Os07g0541700 protein	403	491	-	-
	Vium823g00016	492	FunFam	Cysteine-rich receptor-like protein kinase 2	38	140	-	-
	Vium823g00016	492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium823g00016	Vium-Chr823	80688	83376	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium823g00016	17	492	Receptor kinase-like Gene Family	AT5G40380	53.112	8.99e-178	506

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium823g00016		Pkinase	4.8e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium823g00016	-		-	gmx:100819689	794.267