Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium823g00015 ATGGCTTTCAAATGTCACAGCAACCAGTGCAAGATTGCAGCTTTTGATGTTGTTATCTTGGCAGTGGCCACCCTCTTGTGTTTCTCACATTCAGCAGTGTCTGATCCAAGAATCTCTGAAGTGGGGTTGTACTGTGGCACTCACAGAGCATCACCAAGTGGTAACTATGTCCCTGTTTTCACCAAAGAAATGGGAAGGCTTCAAGAGCTTGTGAGCAAAAACAACTGGGGCACTCATTCTGAGGAACCGTCATCAACCTCTCCGATCTATGGTTTGGCACAGTGCTTCCAAGATCTTTCCAATATTGATTGTCTTCAGTGCTTTGCAGCCAGTCGCACCAAGCTTCCTCGCTGCGTGCCTTCCGTTTCTGGTCACATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACTCTGAGGACACTGACCCTTTGAGGGATACAGTGAACTGCACCACACAGTATGGTGGTGTGGCTGGTGAGGCTGAGGTGGTGTTTGGCAAGAGTGTTGGGAAAGTGGTTGAGAATGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGGTGAGGGAGTTTATGCTTTGGCACAGTGCTGGAAAACTGTTGGAGAAAAAGGGTGTGGTGATTGCTTGAAGAAAGCTGGAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGGGCCTTGAATTCTGGCTGTTATTTGAGATATTCCACTGTTAAGTTCTACAATCAAGGAGGTGAACATGGTGATGGAGATGATTCTTCTAGAAAAAGAACCATCATTACAGCAGTCTCAGTCTTGGCTGCAGTTGTTGTAGTTCTCTCTCTCTTAGTCTCCTATGTGGCCTTCACCAAAAAGAGAAAAAAAAAGGACTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACGGATTATTTTAGCACTCCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTGTTCAAAGGGACTCTCCCAAACGGGAAAGATGTTGCTGTTAAGAGATTGATCTTCAATAATAGACAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGCGGAATAAATCACAAGAACCTTGTCAAGCTATTGGGTTGCAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAATACCTACCTAACAAGAGCTTAGACCATTTCATTTTTGAAAAGGACAAAACAAGGATTCTAAAATGGAAGCAGAGGTTTGAAATAATTGTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATAATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAACCCCAAGATTGCAGATTTTGGTCTTGCAAGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTTACTCAAGGACAACTTACAGATAAAGCAGATGTTTATAGTTTTGGAGTGCTTGTTCTAGAGACTGCAAGTGGCAGGAAGAACAATGTCTTCCGTGAGGATTCTGGTTCTCTTTTGCAAACAATTTGGAAACTTTACCAATCAAACAGATTGGCTGAAGCTGTAGATCCATGCTTGGGAGATGAGTTTCCTGAAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTGTGCACACAAGCTTCTGCTTCCCTTAGGCCATCCATGGCTCAAGTTGCTTGCATGTTAAGCAATTCAAATTTGGATGTGCCTATACCAAAACAACCTCCATTTTTGAACTCTAGATTACTCAGTCAAACAGCTCCTTTAGGTTTTAGCATAGATAACTCCTCATCAAACACATTTCAAAAGATTGGCGTGTCTTATAGCCCCTCTCAGTCTTCTAGTTCATGCAGCTTAATTAGACCATCCAAAAGTGAAGAAACAATTTTGGAAGCTTGA 1998 0.4249 MAFKCHSNQCKIAAFDVVILAVATLLCFSHSAVSDPRISEVGLYCGTHRASPSGNYVPVFTKEMGRLQELVSKNNWGTHSEEPSSTSPIYGLAQCFQDLSNIDCLQCFAASRTKLPRCVPSVSGHIYLDGCFLRYDNYSFYSEDTDPLRDTVNCTTQYGGVAGEAEVVFGKSVGKVVENVVRVAVNEGRGFAVGEGEGVYALAQCWKTVGEKGCGDCLKKAGNEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEHGDGDDSSRKRTIITAVSVLAAVVVVLSLLVSYVAFTKKRKKKDFIEIPSYLKNSSLNYKYETLEKATDYFSTPRKIGQGGAGSVFKGTLPNGKDVAVKRLIFNNRQWVDDFFNEVNLISGINHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFIFEKDKTRILKWKQRFEIIVGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLTQGQLTDKADVYSFGVLVLETASGRKNNVFREDSGSLLQTIWKLYQSNRLAEAVDPCLGDEFPEREASRVFQIGLLCTQASASLRPSMAQVACMLSNSNLDVPIPKQPPFLNSRLLSQTAPLGFSIDNSSSNTFQKIGVSYSPSQSSSSCSLIRPSKSEETILEA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium823g00015 665 ProSiteProfiles Gnk2-homologous domain profile. 38 140 IPR002902 -
Vium823g00015 665 ProSiteProfiles Gnk2-homologous domain profile. 149 250 IPR002902 -
Vium823g00015 665 Pfam Salt stress response/antifungal 75 138 IPR002902 -
Vium823g00015 665 Pfam Salt stress response/antifungal 165 247 IPR002902 -
Vium823g00015 665 FunFam Cysteine-rich receptor-like protein kinase 2 403 603 - -
Vium823g00015 665 Gene3D - 155 250 IPR038408 -
Vium823g00015 665 Gene3D - 40 140 IPR038408 -
Vium823g00015 665 FunFam Cysteine-rich receptor-like protein kinase 3 151 250 - -
Vium823g00015 665 CDD STKc_IRAK 333 595 - -
Vium823g00015 665 MobiDBLite consensus disorder prediction 642 656 - -
Vium823g00015 665 SMART serkin_6 327 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium823g00015 665 FunFam Cysteine-rich receptor-like protein kinase 2 38 140 - -
Vium823g00015 665 SUPERFAMILY Protein kinase-like (PK-like) 313 615 IPR011009 -
Vium823g00015 665 Pfam Protein tyrosine and serine/threonine kinase 330 592 IPR001245 GO:0004672|GO:0006468
Vium823g00015 665 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 90 620 - -
Vium823g00015 665 FunFam Cysteine-rich receptor-like protein kinase 2 293 402 - -
Vium823g00015 665 MobiDBLite consensus disorder prediction 642 665 - -
Vium823g00015 665 Gene3D Transferase(Phosphotransferase) domain 1 403 602 - -
Vium823g00015 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vium823g00015 665 Gene3D Phosphorylase Kinase; domain 1 288 402 - -
Vium823g00015 665 ProSiteProfiles Protein kinase domain profile. 327 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium823g00015 Vium-Chr823 79091 83375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium823g00015 17 492 Receptor kinase-like Gene Family AT5G40380 53.112 1.29e-175 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium823g00015 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium823g00015 - - gmx:100819689 1067.37