Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium823g00003 ATGGCCATGGACGCTCGAAGCTCTAACTCTCTCTTCACTCACATAGCCTCCAGAGAACTCTTCCGAGTTCGAAAACGACCGCGTATGGAAGGATTCGTCTCCGCCTTCAATGAAACCGGATACGTCGCCGTACAGCACAATGCCGAAGACACCATTCCCCTCTCTCTCTCCTTCGGCAAGACTACGAAATTTGCACACATTCTTGCTGTGTCTGATGAAGACGGTTATGTTAGCTTGTTTGATACTCGTCGCAAATGCCCTCTTAACCCAAACTTTGAAGAAAACAGAGAAGAAGAGAAGATCTGCGATTGGGTTTCGCATCAGAATGCTGTTTTTGATACTTGTTGGATTAAGGAGGATATGCAGATTCTCACTGCGTCCGGTGATCAAACAATAAAATTATGGGATGTTCAAGAACAAAAGTGTCTTGGAGTGTTGATCGGGCACACGGGAAGTGTGAAATCTATGTGTCCCCATCCAACTAATGCAGATATTATTGTCTCTGGTTCTAGAGATGGATCCTTTCGTATTTGGGACTTGAGATGCAAGTCCACTGCTAAGGGTAGACGGGGAGAAGTTAGCATATGTTCAATGGGTGGCGTCAACGGAGCACATGTTTCATCTCAAACACGACGAACAAGAAGGGGAAAGGCCGCTTCCATGAGCATTACGTCTGTTCTTTGTCTCAAGGACCAGGTTTCCGTAGCAAGTGCTGGAGCAGTGGATAGCGTGTTGAAGTTTTGGGATACTAGAAATTTGAAAAATAGTGTTACTCAGACGTGTCCATGTCCTCAGTCAACTGAAAAGCAAAGTTTGCACGGAATATCTAGTTTGTCCCAAGATGAAAGTGGACTTTTTCTTTCGGCTTCCTGCATGGATAACCGAATTTATTTGTACAACACCCTTCAACTTGAAAAAGGGCCTGTAAAATCTTTTTCTGGGTGCCGAATTGAATCATTTTTTGTAAAGTCTGCAATTAGCCCTGATGCGACAAACATTGTCAGTGGTTCTAGTGATGGAAACGCCTATGTTTGGAAGGTTGACAAGCCTTTGGAAGATCCTACTATTTTGAAAACTCACGATGGTGAAGTTACAGCAGTTAACTGGTGTAGCTCCGAAATTGGCAAATTCGCAACTTGTTCTGATGACTTTACAGTTCGGATATGGAATAAAAACAGTTACGTCTCTAGAACACAATGTGCATCTGCGGTTCGGAGAAGAGTAATGGCAATTCCTAGTACAGAGTGCAAAATCCTTTTAAATAATGGCAAAAGGTACTCTAAAACAGACGAAGATGCTTTCTTACCCGATCATAAACTACATCCAATTTCCTCACCCACTCCAATCACACCACCTAAAGTGAACTTATCTGAAGGCCACACGAACCAACTTTCCTCCTCAGGATTTGATCCTAATGCAGCTTCTCAAAAAACTCCTGAATCTGCTTTGAAGAGCCCCTCATCAGTATTGAACCCTCCATCCTCTTTAAAAAGAACTATCCGAGACTACTTTTCAGCATCTCCAAGAACCTTGTAG 1536 0.4323 MAMDARSSNSLFTHIASRELFRVRKRPRMEGFVSAFNETGYVAVQHNAEDTIPLSLSFGKTTKFAHILAVSDEDGYVSLFDTRRKCPLNPNFEENREEEKICDWVSHQNAVFDTCWIKEDMQILTASGDQTIKLWDVQEQKCLGVLIGHTGSVKSMCPHPTNADIIVSGSRDGSFRIWDLRCKSTAKGRRGEVSICSMGGVNGAHVSSQTRRTRRGKAASMSITSVLCLKDQVSVASAGAVDSVLKFWDTRNLKNSVTQTCPCPQSTEKQSLHGISSLSQDESGLFLSASCMDNRIYLYNTLQLEKGPVKSFSGCRIESFFVKSAISPDATNIVSGSSDGNAYVWKVDKPLEDPTILKTHDGEVTAVNWCSSEIGKFATCSDDFTVRIWNKNSYVSRTQCASAVRRRVMAIPSTECKILLNNGKRYSKTDEDAFLPDHKLHPISSPTPITPPKVNLSEGHTNQLSSSGFDPNAASQKTPESALKSPSSVLNPPSSLKRTIRDYFSASPRTL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium823g00003 511 SMART WD40_4 97 136 IPR001680 GO:0005515
Vium823g00003 511 SMART WD40_4 209 249 IPR001680 GO:0005515
Vium823g00003 511 SMART WD40_4 305 346 IPR001680 GO:0005515
Vium823g00003 511 SMART WD40_4 139 179 IPR001680 GO:0005515
Vium823g00003 511 SMART WD40_4 265 300 IPR001680 GO:0005515
Vium823g00003 511 SMART WD40_4 350 390 IPR001680 GO:0005515
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Vium823g00003 511 MobiDBLite consensus disorder prediction 437 511 - -
Vium823g00003 511 Gene3D - 187 419 IPR015943 GO:0005515
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 348 IPR001680 GO:0005515
Vium823g00003 511 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Vium823g00003 511 Gene3D - 31 186 IPR015943 GO:0005515
Vium823g00003 511 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Vium823g00003 511 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Vium823g00003 511 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Vium823g00003 511 Pfam WD domain, G-beta repeat 356 390 IPR001680 GO:0005515
Vium823g00003 511 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Vium823g00003 511 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 5 508 - -
Vium823g00003 511 SUPERFAMILY WD40 repeat-like 66 394 IPR036322 GO:0005515
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Vium823g00003 511 MobiDBLite consensus disorder prediction 450 511 - -
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Vium823g00003 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 390 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium823g00003 Vium-Chr823 18779 28086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium823g00003 107 355 U-box Gene Family AT1G04510 23.810 6.89e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium823g00003 K11790 - gmx:100775857 857.055