Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8239g00001 ATGGGAGAAAGCCGAGTCTCCCAATGTTCAAAGACAAGCCCTTCTAACATTGATGAGGAAGAGTGTGAAAGCCATGCGAATGAAGATCAAAGGAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAGTGAGAAAAAGATTAGACCTTATGTTAGATCCAAGTTACCAAGGCTTCGATGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACTCCTAAACTGGTTCTTCAACTGATGAACATGAAAGGTTTGAGTATTGCCCATGTCAAGAGTCATTTGCAGATGTTTCGGAGCAAAAAGCTGGATGACCGAAATCAAGTATTTTCCGATCATACCAGTCTTGTTGAAATTGGAGACAAAAATATTTATAACCTTAGCCAACTTTCCATGCTTCAAGGATACAATCCCAGTCAAAGTTCGTCCTACAGCTACACAAACAATATCTATCCAAGTTACGGATTCGGGGATGCTTCTTTTGGTAGCTACGAAAAACTTGTGCACAGACCTTTCGATTGGTTTAATGGAATGTCTCGGGCAGGTTCATCCATTTCTGGTGAACAATCAACAAGCAAAACCCGTGAACCAAAAAATGAGCTTTTCTCATTTGGTGCTTATGAAAATCTATGCACAAGATTTAAACACAGTCCATCAAATATTATTCAACAGACACCACAAAACCTCATGCCTGTAAATCCAACAACAGAATTGAAGACACTGAAAAGGAAGGCTGAAGATTCATCACTTGATTTGGATCTGTCACTGAAACTAAACACAAACATGGATTCCGAAGGAACAAAATCGGAGGACCATGAAGTTCATAGCAATCTGTCTCTGTCGTTGTGCTCTCAATCCTCCTCTTCCAATCTCAGCAGCAGGTTAAAGGCAGCAAAAGATCGATGTGAGGAACACGGAAAAAGGGCCAGTACTCTAGATCTGACTATATGA 993 0.4119 MGESRVSQCSKTSPSNIDEEECESHANEDQRKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRSKKLDDRNQVFSDHTSLVEIGDKNIYNLSQLSMLQGYNPSQSSSYSYTNNIYPSYGFGDASFGSYEKLVHRPFDWFNGMSRAGSSISGEQSTSKTREPKNELFSFGAYENLCTRFKHSPSNIIQQTPQNLMPVNPTTELKTLKRKAEDSSLDLDLSLKLNTNMDSEGTKSEDHEVHSNLSLSLCSQSSSSNLSSRLKAAKDRCEEHGKRASTLDLTI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8239g00001 330 MobiDBLite consensus disorder prediction 1 53 - -
Vium8239g00001 330 FunFam Myb family transcription factor 59 117 - -
Vium8239g00001 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677
Vium8239g00001 330 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
Vium8239g00001 330 MobiDBLite consensus disorder prediction 1 15 - -
Vium8239g00001 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Vium8239g00001 330 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Vium8239g00001 330 MobiDBLite consensus disorder prediction 31 45 - -
Vium8239g00001 330 Gene3D - 60 117 - -
Vium8239g00001 330 MobiDBLite consensus disorder prediction 16 30 - -
Vium8239g00001 330 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 24 297 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8239g00001 Vium-Chr8239 415 2411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8239g00001 27 194 G2-like Transcription Factor Family AT2G42660 40.909 6.42e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium8239g00001 Myb_DNA-binding 7.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8239g00001 - - gmx:100801120 430.254