LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8233g00008	ATGGCAGCATCTTGCTACTGCAAGAAAAGTTATGTAAGTGCTTGTTTTCATGTAACATTAACACTCTTGCTTCTTGTAACACCTCATGCAGCTTCATTGGAATTCAACTATCAGCAATTTGGTGACACTGGAAACGACTTCAATACCTCGGGAGATGTTCAAGCTGTGCAAGGAATCCTCCAACTCACCGAGTATAAGCCAGATAGTTATGGTAGAGTCGTATATAACAAATTATTGCATCTTTGGGACAAGAGTTCGGGAAAGGTTGCAGATTTCACTACCCATTTCTTCTTTACCATCAACACCCCAAATAAAACCTATCATGGAGATGGAATCACCTTCTTTCTGGCAGATCCAAAGTTTCCAGACTCCAAAATAGATGGAAGTGGTATTGGTCTGGCCAGCCGTGAGCAACTGGGGTCTATAAATTACGCAAAGGACTTTCCTTTTGTAGCAGTGGAATTTGATACCTTGGCTAATGACTGGGATCCGAAATATGATCATGTGGGTATCGATGTCAATGCTATTAACACTACTCACACTACAGAGTGGTACACTAGCATGGATCAAAGAGGGTATGATGCTGAAATTAGTTTTGAGTCTGTGTCAAACAGATTAAGTGTCACCTTCACCGGATATAAGGATAATGCCAAAATTGAACAGACCTTATTCGCAGTGGTCAATTTGAGTGATATCTTACCTGAATGGGTTAAATTTGGTTTCTCTTCGGCAACAGGATATACTTATGAGGAACATACTCTTAGTTCATGGTCCTTCAAATCTAGTTTGGAGATGGAACAAGACAAGGGTGGAAGCAAAAGAGGGCTGGTGATAGGGCTGAGCGTTGGACTTGGTGTTGGTGTTTTAATAGCTATTGTGGGGGTAACTTTTCTTGTGAGATGGATGATGAGGACTAGAGGAATAGAAGATGTCTCCCTTTTTGACCATGCTATGGACAATGATTTCGAAAAAGTCTCTGTACCCAAGAAATTTTCCTATGAAGAACTAGCCAGAGCAACCAATAACTTCGCAACAGAAAACAAAATTGGACAGGGAGGTTTTGGCGCCGTCTACAGGGGATTTATAAGAGAGTTGAACACCTATGTTGCCATTAAGAAGGTATCTCGTGGATCTAGACAAGGGGTGAAAGAGTATATATCTGAAGTAAAGATCTTTGGTCAACTGAGGCATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATGAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAGGTGAGATACAATATTGCGAGAGGGTTGGCATCAGCATTGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCTAATTTTAATACAAAGCTTGGTGATTTTGGGTTAGCCAGACTAATGGATCATGGAATAGGATCAAAAACAACCGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTACCACAAGAGGCAAGGCCAGTAGGGAATCTGATGTATTCAGTTTTGGAGTAGTTGCTTTGGAGATAGCCTGTGGTAGAAAAGCAATTGAATCTAATATGAAGGAAGAACAGATGTATTTGGTGGATTGGGTTTTGGAACTCCATAGCATTGGTGAAGTTCTTAAAGCTTCTGATTCAAGCTTATATGGACACTTTGATGAGAAGGAAATGGAGACGTTAATGATAGTTGGCCTTTGCTGCACTCACACAGATTACCTCATGAGACCTACCATTAGGCAAGTTGTTCAGATGCTTAATTTTGAAGCTCCATTGCCCATTCTCACACAAAGGGGATCAGTCTATAATGCATCTTTCAGTTCTATGGCTTCTGGGACTCCTGCTTTTTCAAATAACCAACCACTGTCTTCAACTTCAAGCAGCAGTGTATTCACGGGGTCCTCACAATCCACAGCAACTCTTGAAATCATTACCCCAACAGCTGCACATTTGCATACCTACTGA	2043	0.4126	MAASCYCKKSYVSACFHVTLTLLLLVTPHAASLEFNYQQFGDTGNDFNTSGDVQAVQGILQLTEYKPDSYGRVVYNKLLHLWDKSSGKVADFTTHFFFTINTPNKTYHGDGITFFLADPKFPDSKIDGSGIGLASREQLGSINYAKDFPFVAVEFDTLANDWDPKYDHVGIDVNAINTTHTTEWYTSMDQRGYDAEISFESVSNRLSVTFTGYKDNAKIEQTLFAVVNLSDILPEWVKFGFSSATGYTYEEHTLSSWSFKSSLEMEQDKGGSKRGLVIGLSVGLGVGVLIAIVGVTFLVRWMMRTRGIEDVSLFDHAMDNDFEKVSVPKKFSYEELARATNNFATENKIGQGGFGAVYRGFIRELNTYVAIKKVSRGSRQGVKEYISEVKIFGQLRHKNLVQLFGWCHEHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASALLYLHEEWEECVLHRDIKSSNVMLDSNFNTKLGDFGLARLMDHGIGSKTTVLAGTIGYLPPEATTRGKASRESDVFSFGVVALEIACGRKAIESNMKEEQMYLVDWVLELHSIGEVLKASDSSLYGHFDEKEMETLMIVGLCCTHTDYLMRPTIRQVVQMLNFEAPLPILTQRGSVYNASFSSMASGTPAFSNNQPLSSTSSSSVFTGSSQSTATLEIITPTAAHLHTY	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8233g00008	680	Pfam	Protein kinase domain	344	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8233g00008	680	SMART	serkin_6	343	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8233g00008	680	FunFam	Lectin-domain containing receptor kinase A4.3	420	631	-	-
	Vium8233g00008	680	Gene3D	Transferase(Phosphotransferase) domain 1	420	628	-	-
	Vium8233g00008	680	SUPERFAMILY	Protein kinase-like (PK-like)	327	622	IPR011009	-
	Vium8233g00008	680	CDD	STKc_IRAK	349	613	-	-
	Vium8233g00008	680	Gene3D	Phosphorylase Kinase; domain 1	328	419	-	-
	Vium8233g00008	680	ProSitePatterns	Protein kinases ATP-binding region signature.	349	373	IPR017441	GO:0005524
	Vium8233g00008	680	ProSitePatterns	Legume lectins alpha-chain signature.	233	242	IPR000985	-
	Vium8233g00008	680	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	265	IPR013320	-
	Vium8233g00008	680	FunFam	L-type lectin-domain containing receptor kinase IX.1	328	419	-	-
	Vium8233g00008	680	Pfam	Legume lectin domain	32	269	IPR001220	GO:0030246
	Vium8233g00008	680	ProSiteProfiles	Protein kinase domain profile.	343	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium8233g00008	680	Gene3D	-	30	279	-	-
	Vium8233g00008	680	PANTHER	-	52	617	-	-
	Vium8233g00008	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	463	475	IPR008271	GO:0004672\|GO:0006468
	Vium8233g00008	680	ProSitePatterns	Legume lectins beta-chain signature.	151	157	IPR019825	-
	Vium8233g00008	680	CDD	JMTM_APP_like	264	306	-	-
	Vium8233g00008	680	CDD	lectin_legume_LecRK_Arcelin_ConA	33	263	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8233g00008	Vium-Chr8233	68370	70806	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium8233g00008	18	627	Receptor kinase-like Gene Family	AT5G10530	45.860	4.51e-170	499

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vium8233g00008		Pkinase	7.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8233g00008	-		-	gmx:100817213	1034.63