Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8233g00004 ATGCAACAGACAAATGTGAAAAATCTCCAAACAGAGCCCAAAGCCACCAAAGATTCGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAATCAAAATATTCCTGTGGTGCCTAAACTTGTGCAAAGTGAGAATGCTTCAGCAACCATGTTGGAAACTAATGGAATAGTGGTGAAAGAGAAGGGTGCTGAAGAGCTTCCTCAGATTTTTACACATAAGGAAGTTCAGAAGGAGTGGACTTGCGCTTTATGCCATGTAACAACAACGAGCGAGAAAACCTTGAATTCACACCTGCAAGGTAGCAAACATAGGCAGATGGAGATTGCTATGAAGGCAAAGAATCAATATAAACAGAAGCTGAAAAGTGATCACTCCAAAGAGGAATTGAAACAGAAGAACATTGATCAGCCAAAATTCAAGACTAAGAATGGAGAGAAACCTACTTGGACGAATAATTCAGAAATAAGATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTGGCCTCTCATAGAAAAGGGAAGAAGCATTTGGCTAAGTTAAAAGTTTAA 558 0.3943 MQQTNVKNLQTEPKATKDSEVIEKKEIPTGNQNIPVVPKLVQSENASATMLETNGIVVKEKGAEELPQIFTHKEVQKEWTCALCHVTTTSEKTLNSHLQGSKHRQMEIAMKAKNQYKQKLKSDHSKEELKQKNIDQPKFKTKNGEKPTWTNNSEIRCEICNVKCPCEITLASHRKGKKHLAKLKV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8233g00004 185 PANTHER OS06G0651300 PROTEIN-RELATED 48 184 - -
Vium8233g00004 185 SMART ZnF_U1_5 152 185 IPR003604 GO:0003676|GO:0008270
Vium8233g00004 185 SMART ZnF_U1_5 76 110 IPR003604 GO:0003676|GO:0008270
Vium8233g00004 185 Pfam Zinc-finger of C2H2 type 156 179 - -
Vium8233g00004 185 Pfam Zinc-finger of C2H2 type 79 103 - -
Vium8233g00004 185 Gene3D Classic Zinc Finger 116 185 - -
Vium8233g00004 185 Gene3D Classic Zinc Finger 58 108 - -
Vium8233g00004 185 MobiDBLite consensus disorder prediction 121 147 - -
Vium8233g00004 185 SUPERFAMILY beta-beta-alpha zinc fingers 146 184 IPR036236 -
Vium8233g00004 185 SUPERFAMILY beta-beta-alpha zinc fingers 73 116 IPR036236 -
Vium8233g00004 185 SMART c2h2final6 155 179 IPR013087 -
Vium8233g00004 185 SMART c2h2final6 79 103 IPR013087 -
Vium8233g00004 185 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8233g00004 Vium-Chr8233 32377 33235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8233g00004 50 184 C2H2 Transcription Factor Family AT2G19380 28.777 5.13e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8233g00004 zf-met 5.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8233g00004 - - vum:124846598 379.022