Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8223g00013 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCCGATACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGCAGAAGGAAGAAGATATGCTGCTGCGAGGGAAGGAAGAGATGGAGAGTGGCTCGGGAAGTGAACAGGTTGAAGATAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACCAAGAAGAAACGATATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATATCATACTTAGAGCCGAGAATGAGACTCTAAAGAGTGAGAACTATCGGTTACAAGCTGCATTGCGTAACGTTATGTGTCCCAATTGTGGTGGCCAATGCATAATGGGTGCTGATCTGGGTTTGGATGAACACCAACTTCGCATGGAAAATGCCCGGTTGAGAGAAGAGTTAGAACGCGTGTGTTGCCTCACTTCAAGGTACACTGGGCGTTCATTACAAACAATGGCAGCAGGTCCAACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCAAGGCACTATTCGGATCCTGTTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCATTTGCTGAGGGTGGAGGAATCTTGATGGAAGAAGAAAAGTCTCTGGCCTTAGAGCTCGCGGCTTCTTCCATGGCAGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGATGGCGAAAGGGAAGTGTTGAATTTTGAAGAGCACGCAAGGATATTTCCTTGCCCTCAGAATCTCAAGCACCGAAGTGAACTGAGAACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAACAGTGTCACTCTTGTTGATGCATTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCTTCAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGCGAGACTCATTTTCTTCGCTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAACTTTCACCAAAATTTTCACCCTTCTTATCCAAAATACTGCAGGAGATCCTCCGGTTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTGGCGAGCCTCATGGCCAGAAACATATCAGATCTAGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACATTTGGCCTTAACATGAGTACCTCCGGTGGTCAATCGTGGACAGCTATATCAGATTCCCCTGAAGACACGGTTAGAATCACAACTAGGAAAGTCACGGAGCCTGGCCAACCTAATGGTGTGATTCTAAGTGCTGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGTCACAGATCTCAGATGGATGCTCTATCTAACGGGAATTCATTGAATGAGGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTGGTAGTGTACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCATGATAGTGCCAAGGCTATCATCACCCAACGTTGACACACCCATCAATGCTAACTCCTCAGAGTCTCCATCTCTCAACTCGGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAACCTTTCAAGTGTAACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATCGAAGGTGCTCTTTCTAGTAGCAGTGAGAATGGCACCAATTTCCTTTGCACTGAAGCCACAGTGAGTGCACCTCCAAAGCAGTGA 2379 0.4712 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMQKEEDMLLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNIILRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQLRMENARLREELERVCCLTSRYTGRSLQTMAAGPTLMAPSLDLDMNIYPRHYSDPVAPCTEMIPVPMLPPEASPFAEGGGILMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSDGEREVLNFEEHARIFPCPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPSIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDNFHQNFHPSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPRLSSPNVDTPINANSSESPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALSSSSENGTNFLCTEATVSAPPKQ 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8223g00013 792 Gene3D - 327 499 IPR023393 -
Vium8223g00013 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 81 769 IPR042160 -
Vium8223g00013 792 CDD START_ArGLABRA2_like 280 509 - -
Vium8223g00013 792 MobiDBLite consensus disorder prediction 55 92 - -
Vium8223g00013 792 MobiDBLite consensus disorder prediction 55 85 - -
Vium8223g00013 792 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Vium8223g00013 792 SMART START_1 285 510 IPR002913 GO:0008289
Vium8223g00013 792 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Vium8223g00013 792 SUPERFAMILY Bet v1-like 277 512 - -
Vium8223g00013 792 Pfam START domain 286 510 IPR002913 GO:0008289
Vium8223g00013 792 Gene3D - 70 152 - -
Vium8223g00013 792 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Vium8223g00013 792 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Vium8223g00013 792 SMART HOX_1 83 146 IPR001356 GO:0003677
Vium8223g00013 792 SUPERFAMILY Bet v1-like 528 766 - -
Vium8223g00013 792 FunFam Homeobox-leucine zipper protein HDG1 72 158 - -
Vium8223g00013 792 CDD homeodomain 85 143 IPR001356 GO:0003677
Vium8223g00013 792 ProSiteProfiles START domain profile. 276 513 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8223g00013 Vium-Chr8223 100145 106153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8223g00013 8 772 Homeobox Transcription Factor Family AT5G46880 57.401 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium8223g00013 START 8.5e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8223g00013 - - gmx:100812829 1410.59