Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8223g00012 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCCGATACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCCATGAAGGAAGAAGATATGCTGCTGCGAGGGAAGGAAGAGATGGAGAGTGGCTCGGGAAGTGAACAGGTTGAAGATAAGTCAGGGAATGAACAAGAGAGTGAACAACCCACCAAGAAGAAACGATATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATATCATACTTAGAGCCGAGAATGAGACTCTAAAGAGTGAGAACTATCGGTTACAAGCTGCATTGCGTAACGTTATGTGTCCCAATTGTGGTGGCCAATGCATAATGGGTGCTGATCTGGGTTTGGATGAACACCAACTTCGCATGGAAAATGCCCGGTTGAGAGAAGAGTTAGAACGCGTGTGTTGCCTCACTTCAAGGTACACTGGGCGTTCATTACAAACAATGGCAGCAGGTCCAACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCAAGGCACTATTCGGATCCTGTTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGTTGCCTCCCGAAGCTTCACCATTTGCTGAGGGTGGAGGAATCTTGATGGAAGAAGAAAAGTCTCTGGCCTTAGAGCTCGCGGCTTCTTCCATGGCAGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATCCGAAGCAGTGATGGCGAAAGGGAAGTGTTGAATTTTGAAGAGCACGCAAGGATATTTCCTTGCCCTCAGAATCTCAAGCACCGAAGTGAACTGAGAACTGAAGCTAGCCGTGACACTTCTGTGGTTATAATGAACAGTGTCACTCTTGTTGATGCATTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCTTCAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGCGAGACTCATTTTCTTCGCTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAACTTTCACCAAAATTTTCACCCTTCTTATCCAAAATACTGCAGGAGATCCTCCGGTTGCGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTAGAAGAGAAACCTGTCCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAATGCGAGAGGGTGGCGAGCCTCATGGCCAGAAACATATCAGATCTAGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAACTAGCCCAAAGAATGATAAAAACATTTGGCCTTAACATGAGTACCTCCGGTGGTCAATCGTGGACAGCTATATCAGATTCCCCTGAAGACACGGTTAGAATCACAACTAGGAAAGTCACGGAGCCTGGCCAACCTAATGGTGTGATTCTAAGTGCTGTTTCAACCACTTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGTCACAGATCTCAGATGGATGCTCTATCTAACGGGAATTCATTGAATGAGGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCGAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTGGTAGTGTACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCATGATAGTGCCAAGGCTATCATCACCCAACGTTGACACACCCATCAATGCTAACTCCTCAGAGTCTCCATCTCTCAACTCGGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAACCTTTCAAGTGTAACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATCGAAGGTGCTCTTTCTAGTAGCAGTGAGAATGGCACCAATTTCCTTTGCACTGAAGCCACAGTGAGTGCACCTCCAAAGCAGTGA 2376 0.471 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDMLLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNIILRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQLRMENARLREELERVCCLTSRYTGRSLQTMAAGPTLMAPSLDLDMNIYPRHYSDPVAPCTEMIPVPMLPPEASPFAEGGGILMEEEKSLALELAASSMAELVKMCQTNEPLWIRSSDGEREVLNFEEHARIFPCPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPSIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDNFHQNFHPSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPRLSSPNVDTPINANSSESPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEGALSSSSENGTNFLCTEATVSAPPKQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8223g00012 791 SMART START_1 284 509 IPR002913 GO:0008289
Vium8223g00012 791 CDD homeodomain 84 142 IPR001356 GO:0003677
Vium8223g00012 791 FunFam Homeobox-leucine zipper protein HDG1 71 157 - -
Vium8223g00012 791 SUPERFAMILY Bet v1-like 527 765 - -
Vium8223g00012 791 Gene3D - 326 498 IPR023393 -
Vium8223g00012 791 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Vium8223g00012 791 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Vium8223g00012 791 SUPERFAMILY Bet v1-like 276 511 - -
Vium8223g00012 791 CDD START_ArGLABRA2_like 279 508 - -
Vium8223g00012 791 MobiDBLite consensus disorder prediction 55 84 - -
Vium8223g00012 791 Pfam START domain 285 509 IPR002913 GO:0008289
Vium8223g00012 791 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Vium8223g00012 791 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Vium8223g00012 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 768 IPR042160 -
Vium8223g00012 791 SMART HOX_1 82 145 IPR001356 GO:0003677
Vium8223g00012 791 MobiDBLite consensus disorder prediction 55 91 - -
Vium8223g00012 791 Gene3D - 69 151 - -
Vium8223g00012 791 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8223g00012 Vium-Chr8223 100113 106153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8223g00012 8 771 Homeobox Transcription Factor Family AT5G46880 57.246 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium8223g00012 START 8.5e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8223g00012 - - gmx:100812829 1415.21