Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8223g00006 ATGAATAACCCGAACCCTCTAAACCAAAGGGAGGGGGAAAAGAAGAGCGCAGAGGTACCGTCCTTCCACCCATCAATGGAGAATTTGCAAAGTGCTCTTAAAGATTATAGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTTCAAGGGATTTCTATCCAGGGGATGTGATTATAGGCCAAGAACCTTACGTTTGTGTTCCAAACAACTCCTCACTTTCCACCCCCAAAAGGTGTGATGGATGTTTCATTACATCTGATGTCCTTAGAAGGTGCTCACGTTGCCATGTTGCATACTATTGCGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGCCTTGAGTGTGAGGTCCTCTCAAGGCTTGACAAGGATAAGAGAAAATCTGTCACGCCATCCATACGGCTGATGGTGAGACTTTACTTACGGAGGAAGTTGCAAGATGATAAGGTCACCCCAAGCACTGCTATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTATATTCCATATTGAAATGGCCGGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGACAATGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATAATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTGCAACATATACCCGCAGGTACTGAGGTAGTGATAAGTTATATAGAGACTGCTGGAAGCACAATAACTCGACAGAGGGCTCTCAAAGAGCAGTATCTATTCACTTGTACATGTCCCCGCTGTTCTAAAATGGGCCAGAAAGATGATATACAAGAAAGTGAAATTTTAGAAGGATATAGATGCAAAAATGAAAAATGTGGTGGTTTCTTGCTTCGAACAACCGATGGGAAAGGATTTCAATGCCAAGGTTGCCAACTAGTTATGGGCAAGGAGGAGATAAAGGAAATTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAGTCTTCTTTCTCTTGCAGTTATCAAGAAGTTATTTCCATTTATAAAAAGATTGAGAAACTGCAAACAAAGCTCTATCATCCTTTCTCAATTAATTTGATGCAAACTCGAGAGAAGATTTTGAAGGTAAGCTCCTGCTTGTCGTTCTTATCTACTCTACTCTTTTTCCTTTATTAA 1287 0.4141 MNNPNPLNQREGEKKSAEVPSFHPSMENLQSALKDYSLSVSTVPEKGRSLFASRDFYPGDVIIGQEPYVCVPNNSSLSTPKRCDGCFITSDVLRRCSRCHVAYYCGTACQRSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVTPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYSILKWPEINIKEIAENFSKFACNAHTICDNELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVQHIPAGTEVVISYIETAGSTITRQRALKEQYLFTCTCPRCSKMGQKDDIQESEILEGYRCKNEKCGGFLLRTTDGKGFQCQGCQLVMGKEEIKEIITEIELLSEEAASKSSFSCSYQEVISIYKKIEKLQTKLYHPFSINLMQTREKILKVSSCLSFLSTLLFFLY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8223g00006 428 ProSiteProfiles Zinc finger MYND-type profile. 83 121 IPR002893 -
Vium8223g00006 428 MobiDBLite consensus disorder prediction 1 21 - -
Vium8223g00006 428 SUPERFAMILY SET domain 35 275 IPR046341 -
Vium8223g00006 428 ProSitePatterns Zinc finger MYND-type signature. 83 121 IPR002893 -
Vium8223g00006 428 Gene3D - 82 133 - -
Vium8223g00006 428 Pfam MYND finger 83 121 IPR002893 -
Vium8223g00006 428 ProSiteProfiles SET domain profile. 36 276 IPR001214 GO:0005515
Vium8223g00006 428 SMART set_7 36 282 IPR001214 GO:0005515
Vium8223g00006 428 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 39 408 - -
Vium8223g00006 428 Gene3D - 134 218 - -
Vium8223g00006 428 Gene3D SET domain 49 302 IPR046341 -
Vium8223g00006 428 Pfam SET domain 47 275 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8223g00006 Vium-Chr8223 66384 71161 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium8223g00006 SET 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8223g00006 K11426 - gmx:100789518 624.009