Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium821g00002 ATGAACATAATCATGCAATTGTTGTTATTAGGAGCCAATATTTGCATGCTTTTCTTGCCTCTTCATATCTTAAACATTAGCCCCTTTCACCACTTTAAAGTTACCCTTCAATGCATATTGCATCACCATTACATAATTCACTCTGCATTTCTGCTTTTTCTTCTGTCTCTCTTTTCACAAAAAATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGGGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCCTATGTAGCCAATCATGGAACTGGAAACTGGACATTGGTTCCAAAGAAAGCAGGTCTGAATAGGTGTGGTAAAAGTTGCAGACTAAGATGGACCAACTATCTAAGACCTGACCTCAAGCATGATAGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGGCGCCATAGGAAGCAGATGGTCTTTAATTGCAAGAAGATTACCTGGGAGAACTGACAATGATGTGAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTGACTCATAAACCAGTATCACAAGTCCTCTCTGATTTGGGAAGCATCAGTGGCTTCCCAAACACCACCACCACTAACCAAATGGCTTATGTTAACAAGGATTTGATGAAGAACAACATGGCACCAACCAAAACTGAACCATCAGGTTCCAATAAGTCAGTGGTGGAGAACACACAAGAGGGTCAAGTTCACTCATGGCAACACCACATTCCTTACCAAGTCCTCACCACAGAAAATGTGCAATCTCAAGTCTTCAGTGAAACTGCATCCTCCACCTCATCCTCATCTTCTTCCAACCTCACCCAGTTAGGCTCACCACAGTCCTACTCTTGCCAAACCCCTCAGGCTCAAACTGCCCCTCATTGTTCCTCCTTTGATTGGAGTGAGTTTCTTCACAGTGACTCATTTGTGTGGTCACTGAACCCCTCAAGTCTGGTGCAAAGTGAAGCTGATCTTTCCATCAATGCCAAAACCAATGGCCATGACAAACAAGGAGTTGCAGCAGTTGAGGGTTGTTGTGGTGGAAGCATGGAATATCAAATTAAAAAGCAATGTGAAGGTCATTCATTTGTAGATGGTATTCTGGACAGGGATAGTGAGTTAAGAGCAGCATTTCCAGAACTTTTGGATGCTTCTTTTGACTACTAA 1200 0.4225 MNIIMQLLLLGANICMLFLPLHILNISPFHHFKVTLQCILHHHYIIHSAFLLFLLSLFSQKMGRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHGAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGFPNTTTTNQMAYVNKDLMKNNMAPTKTEPSGSNKSVVENTQEGQVHSWQHHIPYQVLTTENVQSQVFSETASSTSSSSSSNLTQLGSPQSYSCQTPQAQTAPHCSSFDWSEFLHSDSFVWSLNPSSLVQSEADLSINAKTNGHDKQGVAAVEGCCGGSMEYQIKKQCEGHSFVDGILDRDSELRAAFPELLDASFDY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium821g00002 399 ProSiteProfiles Myb-like domain profile. 70 122 IPR001005 -
Vium821g00002 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 177 IPR017930 -
Vium821g00002 399 CDD SANT 78 122 IPR001005 -
Vium821g00002 399 CDD SANT 130 173 IPR001005 -
Vium821g00002 399 MobiDBLite consensus disorder prediction 270 299 - -
Vium821g00002 399 Gene3D - 68 128 - -
Vium821g00002 399 FunFam Transcription factor RAX3 68 128 - -
Vium821g00002 399 PANTHER F14D16.11-RELATED 62 399 - -
Vium821g00002 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 126 IPR017930 -
Vium821g00002 399 SMART sant 74 124 IPR001005 -
Vium821g00002 399 SMART sant 127 175 IPR001005 -
Vium821g00002 399 Pfam Myb-like DNA-binding domain 130 171 IPR001005 -
Vium821g00002 399 Pfam Myb-like DNA-binding domain 75 122 IPR001005 -
Vium821g00002 399 MobiDBLite consensus disorder prediction 223 246 - -
Vium821g00002 399 Gene3D - 129 192 - -
Vium821g00002 399 SUPERFAMILY Homeodomain-like 72 169 IPR009057 -
Vium821g00002 399 ProSiteProfiles Myb-like domain profile. 123 173 IPR001005 -
Vium821g00002 399 FunFam transcription factor MYB80 130 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium821g00002 Vium-Chr821 13402 15848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium821g00002 62 399 MYB Transcription Factor Family AT3G28470 48.098 6.31e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium821g00002 Myb_DNA-binding 5.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium821g00002 K09422 - gmx:100815077 593.578