Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8213g00003 ATGCAATTTTCCTATTTCATGTTTTCCCTCTCAAAATCCAACTTCTCTCCTGTTCGCCCCACCCTCCCTCCGTTTCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCCACACCGTCCAGACCACCCAAAAGATCACCGAAGCTATGAAGCTCGTCGCCGCCGCTAGGGTCCGCCGCGCTCAGGAGGCCGTCGTCAACGGCCGCCCCTTTGCCTCAAACCTCGCAGAAATGCTGAACGACATCACCCAGCGCCTAAAAAGCGACGACGTTTCCACCCCCCTCACTGATGCCAGACCCGTCAAGACCGTCGCCCTCGTCGTTTTCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAAATGGGTAATAAAAAAAGCCGTGACCCGAATCGAGGAGCTGAAGAAACTCAATCTGGAGTGCGTTGTTATAAGTGTCGGCAAAAAGGGTAACTCGTATTTTACTCACAACAATGAAAGGAAACACCCTTTTGTTAAAGTCGACAGCTTTATCGAAATTGGAGGTTTTCCCACAGCAAAGGAGGCTCAGGTCATTGCTGATGATGTTTTCTCATTGTTTGTTAGTGAGGAGGTGGATAGAGTCGAACTTGTGTACACTAGGTTTGTTTCACTGGTTAGGTTTGAACCTGTGGTTCAGACTTTGCTGCCTCTGGGGGAGGTTTATGATGTGAAAGATGATGTTTTTAGGTTGAGTTCTAAGGAGGGGAAGCTGGCTGTGGAGAGGGATGTTGTGAGGTTGAGGAAAGAGGGTGAGGTGTTTTCCCCTCTTATGGAGTTTGAGCAGGATCCTGTTCTCATTCTTGATGCCATGTTACCTCTTTATTTGAATAGTCAGATTTTGAGGGCGTTGCAGGAGTCTGTAGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCTTCTGCTACCGATAACGCTGTTGAATTGAGTAAAAGACTTTCGGTTGAATACAACCGGGAGCGGCAGGCGAAGATCACAGGGGAGTTGCTGGAGATTGTGGCTGGAGCCGAGGCTCTTACACCAATTGACTTATGA 1050 0.5048 MQFSYFMFSLSKSNFSPVRPTLPPFRCGIRELRQRIHTVQTTQKITEAMKLVAAARVRRAQEAVVNGRPFASNLAEMLNDITQRLKSDDVSTPLTDARPVKTVALVVFTGDRGLCGGFNKWVIKKAVTRIEELKKLNLECVVISVGKKGNSYFTHNNERKHPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVSEEVDRVELVYTRFVSLVRFEPVVQTLLPLGEVYDVKDDVFRLSSKEGKLAVERDVVRLRKEGEVFSPLMEFEQDPVLILDAMLPLYLNSQILRALQESVASELAARMGAMASATDNAVELSKRLSVEYNRERQAKITGELLEIVAGAEALTPIDL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8213g00003 349 ProSitePatterns ATP synthase gamma subunit signature. 330 343 IPR023632 -
Vium8213g00003 349 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 28 344 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 PRINTS ATP synthase gamma subunit signature 322 343 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 PRINTS ATP synthase gamma subunit signature 291 310 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 PRINTS ATP synthase gamma subunit signature 198 215 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 Hamap ATP synthase gamma chain [atpG]. 26 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 FunFam ATP synthase gamma chain, chloroplastic 27 94 - -
Vium8213g00003 349 Pfam ATP synthase 29 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 NCBIfam ATP synthase F1 subunit gamma 29 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 FunFam ATP synthase gamma chain 93 224 - -
Vium8213g00003 349 PANTHER ATP SYNTHASE GAMMA CHAIN 26 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vium8213g00003 349 FunFam ATP synthase gamma chain, chloroplastic 239 344 - -
Vium8213g00003 349 Gene3D - 95 224 - -
Vium8213g00003 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 243 344 - -
Vium8213g00003 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 28 94 - -
Vium8213g00003 349 CDD F1-ATPase_gamma 29 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8213g00003 Vium-Chr8213 32326 35065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8213g00003 5 344 Primary Pumps ATPases AT1G15700 64.407 7.39e-149 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8213g00003 K02115 - gmx:100797879 556.214