Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8213g00001 ATGGCAAACAGTAATGGTGATTCCAATGGGGAGAATGGTTTGTTGGCAGTGTTTGGTGGCAATGAATTTGGTGGCGGCGGCGGTGGTGAGGGTGGTGGCAAATTGGAGGAGGTGATTCTGAAGAAGGGTCCTTGGACAGCTGCAGAAGATGCTGTTCTCATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCCAACCATTTGAGGCCCAATTTGAAAAAAGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTCCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATGCAGATGAGAATGATCACCATTGTTCCACAACACCAAATCCTTCTCCATGCTTCACACAAACAGGATCAAACCCTAATAACAATCTCACAAACTTTGAGTTCTTCAAACAAAGCCACCACCAACACTATCATCAACAACAACAACAACAACAAGAGCAACAACACTCACAACAACAACCTCTATCTCCATCTCCAACTCAACATTCCCCTCTGAGTTCCCCTTTCCATCACAGACAACCCTTCACCACTTCTTCACCTCTCACTTTCTTAGACCAGTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCTCTCTCTCCTTCACCTTCCAAAGACCAGAACCACTCCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTTCAAGCTACAACCCCCTCCCCGACCTTCCTCTCACAACCCAATTCCCTCATCTTGATGCATTCAGATTCCCAGTTTCTTCAGGTTTCTCTCCATATTTTCAACCATCTTTCTTAGAATCTGACCGAGGCATTTCTTCTTCCTCCTCCTTCCAACCCAAGTTGGATCTCCCTTCAAGCCAGTTCTACAAACCACCCCAAGACCAAGACATTAAGCTTGACATTGATTTCAACGACCCTTCATTCCAAACCGGTAGCGGATTGCTGGGGGGTCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGTCAGAACTCAAAGAAACGACCCCACTTGAGTTTAAACGAGGGAAATGATTTTTTCGATGCATGCCAAAGCTTTGAGGACTTTCCATCTAGCTCGCTTTACTGGCCTTCTTCTGCATCAGCAGCAAAAGCAAAGGAAGAAGCACCAGACTTGAGCAAGTTCACGAATGAAGAGTTGTCATCATTGCGTACGGTGATTCCATCTTCCAACACACAGGGTCATGACTGGCTCAACAATGGCGATCCAGAAGGGTTGAATGTGCAACCCTGTGACAGTGGCATGACAGATGACAACTTTGGAGTTGATTTGAAGCCCGTGGCTTCATTGTTTCCTCTCACCAACACCACAAACCATAACGAAAACCAAGGTTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA 1542 0.4689 MANSNGDSNGENGLLAVFGGNEFGGGGGGEGGGKLEEVILKKGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYADENDHHCSTTPNPSPCFTQTGSNPNNNLTNFEFFKQSHHQHYHQQQQQQQEQQHSQQQPLSPSPTQHSPLSSPFHHRQPFTTSSPLTFLDQSPLPLSSSSPSSLSFTFQRPEPLLCTPLRFKRYRASSSYNPLPDLPLTTQFPHLDAFRFPVSSGFSPYFQPSFLESDRGISSSSSFQPKLDLPSSQFYKPPQDQDIKLDIDFNDPSFQTGSGLLGGLLLEAQALASGQNSKKRPHLSLNEGNDFFDACQSFEDFPSSSLYWPSSASAAKAKEEAPDLSKFTNEELSSLRTVIPSSNTQGHDWLNNGDPEGLNVQPCDSGMTDDNFGVDLKPVASLFPLTNTTNHNENQGCYPWDNLPGLC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8213g00001 513 FunFam Transcription factor GAMYB 97 143 - -
Vium8213g00001 513 CDD SANT 44 89 IPR001005 -
Vium8213g00001 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Vium8213g00001 513 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 461 - -
Vium8213g00001 513 FunFam MYB-related transcription factor 41 94 - -
Vium8213g00001 513 ProSiteProfiles Myb-like domain profile. 40 89 IPR001005 -
Vium8213g00001 513 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Vium8213g00001 513 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Vium8213g00001 513 MobiDBLite consensus disorder prediction 153 174 - -
Vium8213g00001 513 Gene3D - 97 165 - -
Vium8213g00001 513 MobiDBLite consensus disorder prediction 157 174 - -
Vium8213g00001 513 SUPERFAMILY Homeodomain-like 41 136 IPR009057 -
Vium8213g00001 513 CDD SANT 97 138 IPR001005 -
Vium8213g00001 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 89 IPR017930 -
Vium8213g00001 513 MobiDBLite consensus disorder prediction 189 246 - -
Vium8213g00001 513 Gene3D - 41 94 - -
Vium8213g00001 513 SMART sant 41 91 IPR001005 -
Vium8213g00001 513 SMART sant 94 142 IPR001005 -
Vium8213g00001 513 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8213g00001 Vium-Chr8213 13601 15596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8213g00001 15 163 MYB Transcription Factor Family AT4G26930 68.421 8.06e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8213g00001 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8213g00001 - - vun:114188481 791.571