Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00013 ATGTCGTTGCACCGTGGTGAAGGAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTATTGGCCGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTACCGGAAAATAATCAAACTGAGCCTACAAGCCCTGATCCATGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACTCATGGTGGCTTTTCTGTCCTTCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCGCGTAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCTGTTCAAAGCAGCATGCCATCATCTGTAATTTCTAGTCAGAGCATGCACCTAGGAGTTCTCGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGATGAGGCTTGAAGGGGATGATTCTACTGAAACAGACAAAAGAATTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAAACTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTACCTACAACAATGTCATCTCAACCTGTTGTTCTAAAGAATAAAAGGCCTCGACAAGCAACTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCTCCTACTTTCTGGGATCCTGGTCTGACACAGTCAGATATTACACAACTTGGTGTTATTACCGAAAGCAAAAGGAGTGAAAGTACTGCTCACATGTGGCATCATAACAATAACAGCAGCAGCAATATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTCTCCTTCTCATTTATATCTTGACACAAGTGATGATAGCAAGAGTATATCAGCTTCTCCTATTTCAAAAATTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGATAAGGAGATCAGCAATGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGGATTGACCTTATTGATCACACAAGGAGCAACTCTCTTTCTGTAGATAATGCATCTGCAGTCACATCTGAGGGCAGAACTGATGCAAGCCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCGCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGATATGAACAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGCTCAAGCCAGGATGTGCACAAACTGAGCTCAGGGAGCAAACTACCTATCTCTTCAATGGAAGACTCTGTAATAAGCTCAGACACAGCTGAGACCTGA 1986 0.4355 MSLHRGEGDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEPETDEVYAQITLVPENNQTEPTSPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKRISGTIIGVEDISPHWVNSKWRSLKVQWDETPSFPRPDRVSPWEIEPILASVPTTMSSQPVVLKNKRPRQATEVPDLGDTPLIAPTFWDPGLTQSDITQLGVITESKRSESTAHMWHHNNNSSSNISMNQRKASWLSSPSHLYLDTSDDSKSISASPISKIHSERLNNDHCLDQVDKEISNVEPATGCRLFGIDLIDHTRSNSLSVDNASAVTSEGRTDASHESDISKASKEWKQEQLQVSPKETQNKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSMEDSVISSDTAET 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00013 661 MobiDBLite consensus disorder prediction 516 530 - -
Vium8212g00013 661 MobiDBLite consensus disorder prediction 508 539 - -
Vium8212g00013 661 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium8212g00013 661 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Vium8212g00013 661 SMART B3_2 116 218 IPR003340 GO:0003677
Vium8212g00013 661 CDD B3_DNA 114 216 IPR003340 GO:0003677
Vium8212g00013 661 Gene3D - 277 350 - -
Vium8212g00013 661 Gene3D - 113 217 IPR015300 -
Vium8212g00013 661 FunFam Auxin response factor 277 350 - -
Vium8212g00013 661 ProSiteProfiles PB1 domain profile. 551 632 IPR000270 GO:0005515
Vium8212g00013 661 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Vium8212g00013 661 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Vium8212g00013 661 FunFam Auxin response factor 114 218 - -
Vium8212g00013 661 SUPERFAMILY CAD & PB1 domains 554 627 - -
Vium8212g00013 661 Gene3D - 547 639 - -
Vium8212g00013 661 Pfam AUX/IAA family 594 638 IPR033389 -
Vium8212g00013 661 Pfam AUX/IAA family 476 587 IPR033389 -
Vium8212g00013 661 FunFam Auxin response factor 546 639 - -
Vium8212g00013 661 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00013 Vium-Chr8212 221902 226958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00013 4 644 B3 DNA Binding Superfamily AT4G23980 58.994 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium8212g00013 AUX_IAA 3.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00013 K14486 - gmx:100799088 1122.07