Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00012 ATGTCGTTGCACCGTGGTGAAGGAGATGAGCTCTACGAGCAGCTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTATTGGCCGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTACCGGAAAATAATCAAACTGAGCCTACAAGCCCTGATCCATGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACTCATGGTGGCTTTTCTGTCCTTCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCGCGTAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCTGTTCAAAGCAGCATGCCATCATCTGTAATTTCTAGTCAGAGCATGCACCTAGGAGTTCTCGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGATGAGGCTTGAAGGGGATGATTCTACTGAAACAGACAAAAGAATTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAAACTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTACCTACAACAATGTCATCTCAACCTGTTGTTCTAAAGAATAAAAGGCCTCGACAAGCAACTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCTCCTACTTTCTGGGATCCTGGTCTGACACAGTCAGATATTACACAACTTGGTGTTATTACCGAAAGCAAAAGGAGTGAAAGTACTGCTCACATGTGGCATCATAACAATAACAGCAGCAGCAATATATCAATGAATCAGAGAAAAGTTGATAAGGAGATCAGCAATGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGGATTGACCTTATTGATCACACAAGGAGCAACTCTCTTTCTGTAGATAATGCATCTGCAGTCACATCTGAGGGCAGAACTGATGCAAGCCATGAGTCTGATATCTCAAAGGCTTCTAAAGAATGGAAACAAGAACAGCTACAAGTATCGCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGATATGAACAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGCTCAAGCCAGGATGTGCACAAACTGAGCTCAGGGAGCAAACTACCTATCTCTTCAATGGAAGACTCTGTAATAAGCTCAGACACAGCTGAGACCTGA 1860 0.4387 MSLHRGEGDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEPETDEVYAQITLVPENNQTEPTSPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKRISGTIIGVEDISPHWVNSKWRSLKVQWDETPSFPRPDRVSPWEIEPILASVPTTMSSQPVVLKNKRPRQATEVPDLGDTPLIAPTFWDPGLTQSDITQLGVITESKRSESTAHMWHHNNNSSSNISMNQRKVDKEISNVEPATGCRLFGIDLIDHTRSNSLSVDNASAVTSEGRTDASHESDISKASKEWKQEQLQVSPKETQNKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSMEDSVISSDTAET 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00012 619 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Vium8212g00012 619 Gene3D - 113 217 IPR015300 -
Vium8212g00012 619 FunFam Auxin response factor 277 350 - -
Vium8212g00012 619 Gene3D - 505 597 - -
Vium8212g00012 619 SMART B3_2 116 218 IPR003340 GO:0003677
Vium8212g00012 619 CDD B3_DNA 114 216 IPR003340 GO:0003677
Vium8212g00012 619 FunFam Auxin response factor 504 597 - -
Vium8212g00012 619 SUPERFAMILY CAD & PB1 domains 512 585 - -
Vium8212g00012 619 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 597 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium8212g00012 619 Pfam AUX/IAA family 433 545 IPR033389 -
Vium8212g00012 619 Pfam AUX/IAA family 552 596 IPR033389 -
Vium8212g00012 619 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Vium8212g00012 619 FunFam Auxin response factor 114 218 - -
Vium8212g00012 619 Gene3D - 277 350 - -
Vium8212g00012 619 MobiDBLite consensus disorder prediction 466 497 - -
Vium8212g00012 619 ProSiteProfiles PB1 domain profile. 509 590 IPR000270 GO:0005515
Vium8212g00012 619 MobiDBLite consensus disorder prediction 474 488 - -
Vium8212g00012 619 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium8212g00012 619 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00012 Vium-Chr8212 221902 226959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00012 4 602 B3 DNA Binding Superfamily AT4G23980 61.526 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium8212g00012 AUX_IAA 2.7e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00012 K14486 - gmx:100799088 1057.74