Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00006 ATGTTTTTCAAGGTTGTAACAGTGGTGTTTGTGCTGGCAACAACAGTGGCTGGTGAAGATTCCGTGAGTTTCTCCTATAATGGGTTCCGGTCATCACCTCATTTGTATCTTGACGGCGGTGCTGAGTTGACCTCCGGTGGCATGCTTAAACTCACCAACTACACCAGGCAACAAAAGGGTCATGCTTTCTTCCCAAGTCCAATAGACTTCAAGAACACCTCAAATGGAAGTGCATCTTCTTTCTCCACCTCCTTTGTGTTTGCCATAAGTTCTGAGTATCCGAATTTGAGTGGTCATGGGATTGTTTTTGTGGTCTCTCCAACAAAAGGGCTTCCAAATTCTCTGCCAAGCCAGTACCTTGGCCTGTTTGATAACATCAATAATGGCAACACCAGCAACCATGTTTTTGGGGTGGAGCTTGATACCATTCAGAACACTGAATTTGGTGATATCAATGACAACCATGTTGGAATTGATGTCAACGAATTGAAGTCGGTTAAGTCAGCCCCTGCAGGATATTACAGTGTCGGGGAGGTTAAGAATTTGAGTCTGATCAGTGGCTACCCAATGCAGTTATGGGTGGAATATGATGGCCTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATAAACATCGGCAAACCAGAAAGGCCTTTGTTATCTTTAAGCAAAGATCTTTCTCCAATTCTTAACAATGGCATGTACGTTGGATTCTCATCCTCAACTGGGTCAATTCGAAGTTATCATTATATTTTGGGTTGGAGCTTCAAGGTGAATGGCCAGGCTCAACAACTTGCCATCTCTGAACTCCCCACACTACCTAGACGAGGCAGTAAAAAACAGTCTAAGGTTCTTATTATTGTTTTGCCAATCATCATATCACTCAGTTTGGTCATCGTGGGGGTGACTGTTGCAGTTGTTCATGTCATGAAAAGGAAGAAGTTCACGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAAGCGGTGGATTTGGCAGAGTGTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAGAAGGTGTCTCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATTGTTAGCATTGGGCGTCTAAGGCACAGGAATTTGGTTCCCCTTCTGGGGTACTGCAGGCGCAAAGGAGAGTTGCTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTATAACAAACCAAGAGTGACCCTAAATTGGAGCCAGAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGCTTTATCTACACGAGGAATGGGAGCAAGTTGTGGTCCACAGAGACATTAAGGCTAGTAATGTGCTACTTGATGCCCAATTGAATGGTAGATTAGGGGACTTTGGTCTTTCAAGATTGTATGAGCATGGAAGTGACCCTCACACTACTCACGTGGTTGGAACACTTGGGTACCTAGCACCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCTGATGTGTTTGCTTTTGGTGCATTTATGCTAGAGGTTGTTTGCGGAAGAAGGCCAATAGAGCAAGTGGGGTGTTCTGGGAGTGAAATTCTGGTTGATTGGGTGTATAATTGTTGGAAAAGAGGTGAGATTCTTGAGGCAAGGGATCCAAATTTGGGCACAAATTATAAGGCAGAGGAGGTGGAGTTGGTGCTGAAACTAGCTTTGTTGTGCTCGCATTCAGATCCTTCAGCTAGACCAAGCATGCGCCAAGTTGTTCAGTACTTGGAGAAGGATGTGCCTCTGCCAGACTTGTCTTTGCTTAGCTTATCTTCCACCGGCTTAAGATTTGGTCTGCATGAAGACTTTCAGGATTGTCCAATGTCTTATCCTTCGTCCATGGATAGGCCAATCTCTCGCACTTCTTCAGTTGCTGAATCACTTCTCTCTGGTGGACGTTGA 2013 0.4461 MFFKVVTVVFVLATTVAGEDSVSFSYNGFRSSPHLYLDGGAELTSGGMLKLTNYTRQQKGHAFFPSPIDFKNTSNGSASSFSTSFVFAISSEYPNLSGHGIVFVVSPTKGLPNSLPSQYLGLFDNINNGNTSNHVFGVELDTIQNTEFGDINDNHVGIDVNELKSVKSAPAGYYSVGEVKNLSLISGYPMQLWVEYDGLKKQIDVTLAPINIGKPERPLLSLSKDLSPILNNGMYVGFSSSTGSIRSYHYILGWSFKVNGQAQQLAISELPTLPRRGSKKQSKVLIIVLPIIISLSLVIVGVTVAVVHVMKRKKFTELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKLEVAVKKVSHESRQGMREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLLYLHEEWEQVVVHRDIKASNVLLDAQLNGRLGDFGLSRLYEHGSDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQVGCSGSEILVDWVYNCWKRGEILEARDPNLGTNYKAEEVELVLKLALLCSHSDPSARPSMRQVVQYLEKDVPLPDLSLLSLSSTGLRFGLHEDFQDCPMSYPSSMDRPISRTSSVAESLLSGGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00006 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 278 IPR013320 -
Vium8212g00006 670 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00006 670 ProSiteProfiles Protein kinase domain profile. 343 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00006 670 FunFam L-type lectin-domain containing receptor kinase V.9 21 263 - -
Vium8212g00006 670 Gene3D - 19 271 - -
Vium8212g00006 670 SUPERFAMILY Protein kinase-like (PK-like) 324 625 IPR011009 -
Vium8212g00006 670 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00006 670 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Vium8212g00006 670 CDD lectin_legume_LecRK_Arcelin_ConA 22 260 IPR001220 GO:0030246
Vium8212g00006 670 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Vium8212g00006 670 PANTHER - 39 618 - -
Vium8212g00006 670 ProSitePatterns Protein kinases ATP-binding region signature. 349 373 IPR017441 GO:0005524
Vium8212g00006 670 Pfam Legume lectin domain 22 270 IPR001220 GO:0030246
Vium8212g00006 670 CDD STKc_IRAK 349 615 - -
Vium8212g00006 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vium8212g00006 670 Gene3D Transferase(Phosphotransferase) domain 1 420 618 - -
Vium8212g00006 670 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00006 Vium-Chr8212 170090 172462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00006 21 670 Receptor kinase-like Gene Family AT2G37710 63.859 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium8212g00006 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00006 - - gmx:100783815 1100.5