Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00005 ATGACCACCCTTTTGAAATTGTTGTCTCTTTTGGTGTTTCTTCTGATCCCAGTTTCATCCCAGGTTGAGCAGCTTCTCTATGCTGGATTCAAGGATGTGGGTGCTAGCAACCTGACATTGAATGGGGTGGCTGAGATAGAGAAAAATGGAATACTCAAATTGACTAATGAAACCAGCAGGTTAATGGGTCATGCCTTTTACCCATCTCCTTTTCAGATGAAGAACTCCACCACCGGTAAAGTTGTTTCCTTTTCTTCCTCGTTTGCTCTGGCTATTGTTCCTGAGTACCCCAAGCTAGGTGGCCATGGCTTGGCTTTCACAATAGCAACTTCCAAGGATCTCAAGGCTCTACCTAGCCAGTACCTTGGCCTTCTTAATTCCAGTGATAATGGCAACATCTCCAACCATATCTTTGCTGTTGAGTTTGACACTGTGCAAGACTTTGAGTTTGGGGATATTAATGATAACCATGTTGGAATAGACATCAATAGCATGCAGTCCAATAAATCTGCTAATGTTAGTGTGGTGGGTCTCAATCTCAAAGGTGGGAAACCGATTCTGGCTTGGGTTGATTATGATTCTGAATTAAGTGTTATCAGTGTTGTACTTTCCCCAAATTCATCCAAACCCAACACTCCAATCTTGTCCTTTAATGTGGATCTCGCACCCGTTTTTCATGACACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCCAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCACCACCCCTTGATCTCTCTTCTCTCCCGATGCTTCCACAGCCAAAGAAAAAGCAGACATCTTTGATAGTTGGGGTTTCAGTCTCAGTTGCTGTTATTGTGTTATTAGCCATCGCCATTGGCATTTACTTTTACAGAAAAATGAGGAACGCCGATGTGATTGAAGCATGGGAGCTTGAAATCGGGCCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACCAGAGGCTTCAAGGATAAAGAACTCCTTGGGCAGGGTGGTTTTGGCAGAGTTTACAAAGGAACATTGCCAAACTCCAAGATCCAAGTAGCCGTCAAGCGAGTTTCTCACGAATCTAAGCAGGGACTGAGGGAATTCGTGTCGGAAATTGCCAGCATAGGCCGGCTTCGCCACCGGAATTTGGTTCAATTACTGGGATGGTGCCGCCGCCGTGGCGACCTCCTGCTTGTGTATGATTTCATGGCCAATGGGAGCTTGGACAAGTACTTGTTTGATGATCCAAAGATGGTCCTAAGTTGGGAACACAGGTTCAAGATCATAAAGGATGTTGCTTCAGCTCTTCTGTATCTACATGAGGGGTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCCAGCAATGTTCTGCTGGATTTTGAGCTTAATGGAAGACTAGGTGATTTTGGGTTGGCAAGATTGTATGAACATGGGGCTAACCCAAGCACCACAAGAGTGGTGGGAACATTAGGCTATCTGGCTCCTGAGTTGCCTAGAACAGGAAAGGCAACTACAAGCTCTGATGTTTTTGCATTTGGGGCACTTCTGCTTGAGGTGGCTTGTGGGCGCAGGCCAATTGAGCCTAAGGCATTGCCAGAAGAGTTGGTTTTGGTGGATTGGGTGTGGGACAAGTACAAACAAGGGAGAATACTCGATGTGGTGGACCCAAAACTAAATGGAAATTTTGATGAGAAAGAGGTGTTGGTGGTGTTGAAATTGGGGTTGTTGTGCTCAAATGATGTGCCTGCTGCTAGGCCTAGCATGAGGCAAGTGATGAGGCATTTAGATGGGGAAGTTGAAGTGCCGGAGGACTTGAAAAAACCAGGAGATATAAGTCAGCAGGAGGGGTTTGATGAGTTCTTGCACTCACTTGCATCTTCTTCCTTTGACAAGATGAGTTCAGGCTCTAATTTTGGAAACAGAGACATGGATAGTTTTCTCTCTTTTGCTAATTCACCTCATTCCCTTCTCCACAGAGGAGAAACAAGGTGA 2019 0.4557 MTTLLKLLSLLVFLLIPVSSQVEQLLYAGFKDVGASNLTLNGVAEIEKNGILKLTNETSRLMGHAFYPSPFQMKNSTTGKVVSFSSSFALAIVPEYPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSDNGNISNHIFAVEFDTVQDFEFGDINDNHVGIDINSMQSNKSANVSVVGLNLKGGKPILAWVDYDSELSVISVVLSPNSSKPNTPILSFNVDLAPVFHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPMLPQPKKKQTSLIVGVSVSVAVIVLLAIAIGIYFYRKMRNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDDPKMVLSWEHRFKIIKDVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWDKYKQGRILDVVDPKLNGNFDEKEVLVVLKLGLLCSNDVPAARPSMRQVMRHLDGEVEVPEDLKKPGDISQQEGFDEFLHSLASSSFDKMSSGSNFGNRDMDSFLSFANSPHSLLHRGETR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00005 672 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Vium8212g00005 672 SUPERFAMILY Protein kinase-like (PK-like) 316 604 IPR011009 -
Vium8212g00005 672 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00005 672 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Vium8212g00005 672 CDD lectin_legume_LecRK_Arcelin_ConA 24 255 IPR001220 GO:0030246
Vium8212g00005 672 FunFam L-type lectin-domain containing receptor kinase S.4 21 259 - -
Vium8212g00005 672 ProSiteProfiles Protein kinase domain profile. 334 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00005 672 FunFam L-type lectin-domain containing receptor kinase S.4 411 617 - -
Vium8212g00005 672 PANTHER - 19 611 - -
Vium8212g00005 672 CDD STKc_IRAK 340 606 - -
Vium8212g00005 672 Pfam Legume lectin domain 25 265 IPR001220 GO:0030246
Vium8212g00005 672 Pfam Protein kinase domain 334 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8212g00005 672 FunFam Lectin-domain containing receptor kinase A4.3 319 410 - -
Vium8212g00005 672 Gene3D - 24 254 - -
Vium8212g00005 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 273 IPR013320 -
Vium8212g00005 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vium8212g00005 672 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00005 Vium-Chr8212 112111 114681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00005 18 617 Receptor kinase-like Gene Family AT3G55550 62.052 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium8212g00005 Pkinase 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00005 - - gmx:100784346 1196.03