Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00002 ATGTCTTCTTGCTATTTCCCCTTCACTTGCCAAAAAAAGATGGAGTTCAACACCCCAATCTATAAGAAATCTGAGATAAGGTGGAGCTCAGATGATCAAGGTGGCCCTGGACAAGTGAAATCTTTTTCTTGTTCCTTCTGCAAGAGAGGATTCTCTAATGCACAAGCCCTAGGTGGCCACATGAATATCCACAGAAGAGATAGGGCAAAGCTCAAGCAATCTTCTGAAGAAAGCTTGCTTTCGTTGGACATCTCAATCAAGACCTCAAGTGATCACAGAAATGACCCTTCTGATTTGGAAGAGAAAATTTTCTTTCGGTTGGGTTCTGGAGAAGATCAGAAGCATGCTAGAAATCGAAAAATGCCATTCAATTTCCCTCACAAAAGTGATCATGATTATGCATCAGAAAGGGCCATGTTCATTGGTTCAGCAGAAATTCCTCATCATCTTCCTTCTTTTGTTTTGGGGCAGCGAATTGAAGAGAAGACAGCTGATTTAGACCTTGAACTTAGGTTAGGCCTGCATCCCCAGGAGACAGCAACATTGAACACTAGATCGTTCTTTTGA 567 0.4198 MSSCYFPFTCQKKMEFNTPIYKKSEIRWSSDDQGGPGQVKSFSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEESLLSLDISIKTSSDHRNDPSDLEEKIFFRLGSGEDQKHARNRKMPFNFPHKSDHDYASERAMFIGSAEIPHHLPSFVLGQRIEEKTADLDLELRLGLHPQETATLNTRSFF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00002 188 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Vium8212g00002 188 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Vium8212g00002 188 Gene3D Classic Zinc Finger 23 97 - -
Vium8212g00002 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Vium8212g00002 188 PANTHER OS07G0101800 PROTEIN 22 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00002 Vium-Chr8212 24618 25184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00002 38 181 C2H2 Transcription Factor Family AT3G53820 38.194 2.73e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8212g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00002 - - ccaj:109793777 296.204