Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8212g00001 ATGGAGGAGAGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTTTGAGCTCTAATCTTCATGGTTCTTCAACTGATTACCCTTCCTGTGATGACCACTCATGGGAAGAGCAAGCCTTTGCAAAAGATGCTGCTTGGTCTGGTTGTGTGTGGCCACCACGATCATATTCTTGTACCTTTTGTACAAGGGAATTTAGGTCAGCACAAGCTTTAGGAGGTCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCACATAGCCCTCAGAATGAAATCCTCAATTATGATCTTGAGAAAACTCAAGCCCAGAATTCGGTTCAAATTTCTTTCACTTCGTTGGGTTACTTATACCCACCTTCTATCAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCACCTTCCAAAGTTTTAGGCACACCAGTTAACAAAAGATGCAGAGAGAAACCCCAGATTCCACAATACAATAGTTCTTCAATTTTCAAAGGATGTCATGAGTTCTCCCCTTCTCTTTCTTCCAAATCCTGGCCAAATTTAACTGATGACTTCAGATTTTGTTCGAGTAGGCTCGATCTTGAAGCTAGTGTTGAGAAAAAATTGCAGGGATTTGATTCTGGGTGTAGGAGTGAGGGTGATAAGGGTAAAACTGAGGTGGGTGTGAGCATGAACTTGTTTATGAGTCGAGCTCACCCACTTGTGCAGTCTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGACACTTCATCCGTTCCATTCTTCCCCAAATCATGTTCAGTTGATAAGGATCATGTGCAGTCAGAGACGTTTGATTTTAGCCCTAGCTCTATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCATAGGTCCGAGGTATAG 921 0.4159 MEESQCLIRSKRKYSLSSNLHGSSTDYPSCDDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPHSPQNEILNYDLEKTQAQNSVQISFTSLGYLYPPSISGLAHNTNPNSDPYSHVVASPSKVLGTPVNKRCREKPQIPQYNSSSIFKGCHEFSPSLSSKSWPNLTDDFRFCSSRLDLEASVEKKLQGFDSGCRSEGDKGKTEVGVSMNLFMSRAHPLVQSENKETDTSFKKRKSDTSSVPFFPKSCSVDKDHVQSETFDFSPSSIEELDLELRLGHRSEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8212g00001 306 Pfam C2H2-type zinc finger 56 80 - -
Vium8212g00001 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Vium8212g00001 306 MobiDBLite consensus disorder prediction 242 267 - -
Vium8212g00001 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Vium8212g00001 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Vium8212g00001 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Vium8212g00001 306 SMART c2h2final6 56 78 IPR013087 -
Vium8212g00001 306 Gene3D Classic Zinc Finger 52 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8212g00001 Vium-Chr8212 13012 14362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8212g00001 34 87 C2H2 Transcription Factor Family AT2G37740 79.630 2.60e-24 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8212g00001 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8212g00001 - - vra:106758996 598.201