Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8203g00006 ATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGCATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAGGGACAATATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAATCGGATAGCACCAATAATGACGAAGATCTCGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACAATATGTGAAAGAACATTTCAGACCAGTCCTAACGAGAGAGGCTGAAATAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTCATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATAACAGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTGGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATATGCGAAGCAAGAAATATTGATCCGACAAAAATTGAATAGTGTGGAGAGTGAAAGCTAA 774 0.4134 MLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESDSTNNDEDLVNSWPLATLKRYIQYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQEYAKQEILIRQKLNSVESES 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8203g00006 257 Pfam MCM AAA-lid domain 132 213 IPR041562 -
Vium8203g00006 257 Gene3D - 1 219 IPR027417 -
Vium8203g00006 257 Pfam MCM P-loop domain 1 111 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 ProSiteProfiles MCM family domain profile. 1 109 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 223 IPR027417 -
Vium8203g00006 257 PRINTS Mini-chromosome maintenance (MCM) protein family signature 33 46 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 PRINTS Mini-chromosome maintenance (MCM) protein family signature 5 19 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 PRINTS Mini-chromosome maintenance (MCM) protein family signature 83 91 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 SMART mcm 1 215 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vium8203g00006 257 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 236 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8203g00006 Vium-Chr8203 30438 33703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8203g00006 1 238 Core DNA Replication Machinery Family AT2G14050 83.613 9.15e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8203g00006 K10738 - vum:124846540 504.212