Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8202g00001 GATACTGTTGCCGTCGCGTCTCCTTCCTGTGTAAAGCTCTTTGAGGAAAAATGGGTTGGGTACCTGCAAAGACACTCCGACACTAAAGTTTCATACCAAAGCTTGTACAATGGAACTGATGGGTTCTCAACTACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGATCTCGAAGACAGAGTTGTTGCCGTAAAGGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCAGAATGTAATGCACTAAAAAATATTAAACATCGAAATCTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCCTGGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCATCCAAGAACATTGAGCCTTAAACAAATATTAAGTATCATGATTGACGTAGCTTCTGCATTACAATATCTTCATCATGAATGTGAGCAGTCGATCATTCATTGTTATTTAAAGCCAAGCAATGTCCTTCTTGATGATGAGATGATTGCTCATGTAAGTGATTTCGGCATAGCAAGACTTCTCTCAACAATCCAAGGTATTACCTCCAAAGAATCAAGTACACTTGCAATAAAGGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAGTGGGTGCTGAAGTGTCAACTTCTGGCGACATGTACAGCTTTGGAATTCTTTTGCTGGAAATGCTTACTGGGAGAAGACCTACTGATGAAATGTTTGAAGATGGTCAAAATATTTGTAACTTTGTTGCAAATTCATTTCCCAGTAAACTTTTTGAAATTTTGGATCCGCTACTTATTCCGATTGAGGAAAATCATTGGAATCTTAATCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTAAAATTGGACTTGCCTGTGCTGTGGAATCACCAAAAGAAAGAATGGATGTGGTTGATGTCAGCAGGGAGCTTCATCGAATTCAAAATGCCTTTTTTG 1027 0.3924 DTVAVASPSCVKLFEEKWVGYLQRHSDTKVSYQSLYNGTDGFSTTNLIGSGNFSSVYKGTLDLEDRVVAVKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEHPRTLSLKQILSIMIDVASALQYLHHECEQSIIHCYLKPSNVLLDDEMIAHVSDFGIARLLSTIQGITSKESSTLAIKGTVGYAPPEYGVGAEVSTSGDMYSFGILLLEMLTGRRPTDEMFEDGQNICNFVANSFPSKLFEILDPLLIPIEENHWNLNPNVEKCLVSLFKIGLACAVESPKERMDVVDVSRELHRIQNAFF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8202g00001 342 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 124 342 - -
Vium8202g00001 342 Gene3D Transferase(Phosphotransferase) domain 1 124 341 - -
Vium8202g00001 342 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 340 - -
Vium8202g00001 342 FunFam LRR receptor-like serine/threonine-protein kinase EFR 16 123 - -
Vium8202g00001 342 Gene3D Phosphorylase Kinase; domain 1 23 123 - -
Vium8202g00001 342 Pfam Protein kinase domain 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8202g00001 342 SUPERFAMILY Protein kinase-like (PK-like) 23 334 IPR011009 -
Vium8202g00001 342 ProSiteProfiles Protein kinase domain profile. 42 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8202g00001 342 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8202g00001 Vium-Chr8202 2665 3797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8202g00001 29 342 Receptor kinase-like Gene Family AT3G47570 50.789 2.78e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium8202g00001 Pkinase 9.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8202g00001 - - vum:124846539 688.723