Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium81g00008 ATGAACGTTAATTCCACACAATCATTACCCCACTCCAACAACGGTTACTACTTTTGCTCCTCCCCGGAAACAAGCTCCTCTCCCAACGCCCTTCACTCCGACGATGAACTACATGCATTAGCGTCGGCGCGCCCCAAGAGACGTGCGGGGCGCCGAATCTTTAAGGAGACACGACACCCCGTGTACCGGGGGGTACGACAGAGGAAGAACAACAAGTGGGTCTGCGAAGTGCGTGTCCCCAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCCCTGAGATGGCCGCACGCGCGCACGACGTTGCCGCGCTCGCCCTCCGAGGAAAGTCCGCTTGTCTCAACTTCGCCGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCTACAAATGCGAAGGAGATACGGCGAGTGGCGGCGGAGGCTGTTGTGGCGATTGCTGCGGAAGACAGTTGCGTCGAGCAATTAGAAAACGAGAATGTGAATCCCGTGGTTGACTGCGAAGTTAGCAGCTGTGGTGCCTGCACTGATGAAGATGGCAATAGTAGCAAAGTGCTGCGGGAGTTTGGTGATTTGGATGAGATAACAGTACCAGTTACATTAGGATTTGAAGACATGCATGAGTGGCTTCAGAACTTGGCGGATGAGCCTCTGAGATCTCCTTCTTTTTTAACGTATGTTAGGGACTGGACATCTCTTGAGGATGATGTTGAAATTTCTTTGTGGAGCTTCTCCTTCTGA 744 0.5349 MNVNSTQSLPHSNNGYYFCSSPETSSSPNALHSDDELHALASARPKRRAGRRIFKETRHPVYRGVRQRKNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAEAVVAIAAEDSCVEQLENENVNPVVDCEVSSCGACTDEDGNSSKVLREFGDLDEITVPVTLGFEDMHEWLQNLADEPLRSPSFLTYVRDWTSLEDDVEISLWSFSF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium81g00008 247 Gene3D AP2/ERF domain 61 120 IPR036955 GO:0003700|GO:0006355
Vium81g00008 247 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 20 244 IPR045277 GO:0003700
Vium81g00008 247 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Vium81g00008 247 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Vium81g00008 247 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Vium81g00008 247 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Vium81g00008 247 FunFam Ethylene-responsive transcription factor 2 60 120 - -
Vium81g00008 247 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Vium81g00008 247 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vium81g00008 247 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium81g00008 Vium-Chr81 107297 108462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium81g00008 31 247 AP2-EREBP Transcription Factor Family AT1G12610 46.903 6.40e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium81g00008 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium81g00008 - - pvu:PHAVU_003G212800g 405.601