Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium81g00007 ATGGCTTCATCCTCATCTTCATCAAAGAGACATCCCTTGTACCACGGAATCCGTTGCCGCGGAGGAAAGTGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGCATATGGTTGGGTACGTTCCTCACTCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTAGCCCTCAAAGGCGGCGAAGCGGTTCTCAACTTCCCGGACTCAGTTGGCAGGTATCCAGTTCCCGCGTCCAAATCCCCTGAGGACATCCGTTCCGCAGCCATTGCTGCAGCAGAACTCATGAAGCCCGAAGCCAGCCACAACAACGTTAATGCAGTAGCCCAGTCTGATAACACAGAGGGTTATGGTTACGGTTACCATAATGTTGTTGGTCCTTCGTATGAAACTGAGTTTCTTGACGAGGAAGCCATATTCTCTATGCCGAGTTTGTTGGTCGACATGGCCGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCGCCCTCTGATTACAGGACCGAAAATTATGCTGGAGAAAATCTGTGGAACTTTTGA 543 0.5267 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGRYPVPASKSPEDIRSAAIAAAELMKPEASHNNVNAVAQSDNTEGYGYGYHNVVGPSYETEFLDEEAIFSMPSLLVDMAEGMLLTPPRMSSPSDYRTENYAGENLWNF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium81g00007 180 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vium81g00007 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 179 IPR045277 GO:0003700
Vium81g00007 180 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Vium81g00007 180 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Vium81g00007 180 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Vium81g00007 180 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Vium81g00007 180 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium81g00007 Vium-Chr81 79935 80478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium81g00007 2 180 AP2-EREBP Transcription Factor Family AT2G36450 48.404 3.23e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium81g00007 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium81g00007 - - vra:106768065 350.132