Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8191g00002 ATGGATAACGCCTCCTCATCTTACAAACTCCCACGGATGTACGATGTGCTCATCAACTTCAACGGAGAAGACATCCACAGAAATTTTGTTTCTCATCTCAATTCTGTCCTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCACAATGCAGTGAATTCAACTCACATCCAAGAACCTATTCTCAGCCGCTGTCGTGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCTACAAATCATCAAATGGCACGAAACTTATTGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGCTTTGAAGGCAACTGCACAACAAACATTTTCAGGACAAGAACTGGAGGATGGAATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAATTAGTGGAGAAAATTGTTAAGAGCGTTGTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCACGTGGAAGATCTGATTCGAACTATAAAAAATAAATCCACTGAAGTTTGTATGATAGAGATATGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGACATTTAAGGAGAAAAGTTTCATGGAAAATATTTCACAAGTTAGAAGAATAAGAGGGTATCTTCGTTTACAAGAACAACTTCTTTTAGATGTCTTAAAACAAAAGGTGGAGATTCCTAACATTGATTTGGGAAGAAGTATGATTCGGGAAAGGCTTTCTGGAAAAAGGGTGCTCATTGTACTTGACGGTGTTTCATGCTTTAGTTTATTCGACCTATGGAACTGTGGTAAATGGTTCGGCGAAGGAACTGTAATAATCGTTACATCAACATTTGAAGGAGTGCTGAACGATGCTAATTCTTTCTTTTGGGTAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTCTCAGTTGGCATGCATTTAGAGAAGCAAAACCAAAAGAAGAATACTATTACCTTGCAACAAAAGTAGTTAGTTATTGTGGAGGACTACCACTAGCTCTGGAAGTCGTTGGAAGTAGTTTATTTGAAAAGACGAAAAAAGAATGGGACACTATATTGTCAAAATTTGCGATAGTTGGGAGGCATCGTTTTTCAGAGATAATAAAAATAAGCATTGAAGGTTCACTGAATGAAATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTAAGAGCAGAGCCTACGTTAGGAAGATCCTAAACGGTTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTTATCGAGCGTAACCTCATCACAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAAAAATCGGAATACAAATTATTCAAGAAAATTTTGTAAAGGATCTTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATACAAAATATGGGACAGAAGACATGCAGTGGATGCCTGTGAAACTGCCTTCAGTTCTCATTGCCTTAAAAAGTGTACAACCGACTGTAAATTCTCAATACCTTATTAAGAAACTAAGATGGATCA 1660 0.3886 MDNASSSYKLPRMYDVLINFNGEDIHRNFVSHLNSVLSTVGLTTFLHHHNAVNSTHIQEPILSRCRVAIVVFTQTYSQSAWCLHQLLQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGKALKATAQQTFSGQELEDGMSRWSHALTKAANFFGWDESNHRSDAELVEKIVKSVVNLPVLSATKFPVGLQSHVEDLIRTIKNKSTEVCMIEICGEEGSGKTTLAKAIYNQIHWTFKEKSFMENISQVRRIRGYLRLQEQLLLDVLKQKVEIPNIDLGRSMIRERLSGKRVLIVLDGVSCFSLFDLWNCGKWFGEGTVIIVTSTFEGVLNDANSFFWVERMNAEESLELLSWHAFREAKPKEEYYYLATKVVSYCGGLPLALEVVGSSLFEKTKKEWDTILSKFAIVGRHRFSEIIKISIEGSLNEMEKDIFLDICCFFVGKSRAYVRKILNGCGVDADIGIRVLIERNLITINKNNKFGMHPLLQKIGIQIIQENFVKDLGKNRRLWFDKDTKYGTEDMQWMPVKLPSVLIALKSVQPTVNSQYLIKKLRWI 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8191g00002 553 SUPERFAMILY "Winged helix" DNA-binding domain 413 512 IPR036390 -
Vium8191g00002 553 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vium8191g00002 553 Pfam NB-ARC domain 191 405 IPR002182 GO:0043531
Vium8191g00002 553 PRINTS Disease resistance protein signature 210 225 - -
Vium8191g00002 553 PRINTS Disease resistance protein signature 285 299 - -
Vium8191g00002 553 PRINTS Disease resistance protein signature 375 389 - -
Vium8191g00002 553 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vium8191g00002 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 435 IPR027417 -
Vium8191g00002 553 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 552 IPR044974 GO:0006952
Vium8191g00002 553 Pfam TIR domain 14 180 IPR000157 GO:0007165
Vium8191g00002 553 SMART till_3 13 153 IPR000157 GO:0007165
Vium8191g00002 553 Gene3D - 11 183 IPR035897 -
Vium8191g00002 553 Gene3D - 340 422 IPR042197 -
Vium8191g00002 553 Gene3D - 190 326 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8191g00002 Vium-Chr8191 54852 56793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8191g00002 3 508 WRKY Transcription Factor Family AT4G12020 27.539 1.08e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8191g00002 - - vum:124837950 842.032