Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8191g00001 ATGGAAAATCAGTTCTTTATCAATTCTGGGCTGTCACAAACACAGCATCCCCTTCACTTTGAACCTTCACCACCACCACCACCACCACCTTCTTCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACACTTCTGAATTGTGCCTCTGAGCAGACCCATGATTGCTTTTACAACCCCAATTGGGAAAAATCAACAGATCATGCACTTCACTTTGATTCCTCAGCACTCAGTTCAATGGTCTCGTCTCCTGCGGCATCATCCAACCCCAGCAGCAACATGTCCAATGATAATTTCATCATCAGGGAATTGGTCGGGAGATTGGGAGCTATTGGGAGTTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCCTCTTCTTACATGAATAATGGCAGTGGCAGCCCCAATACTTCTTGTTACACCACCCCTTTGAGTTCCCCTCCGAAGGTGAAGACTGTGCAGAGCTTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATTACTTTGAATTCCAGTGTGGCCGAATTCTCTGCTGACCCTGGTTTCGCGGAGAGGGCTGCAAAGTTTTCTTGCTTTGGTAGCAGGAGTTTCAATGGTAGGAACGTCCAATTGGGGGTGAACAATGGTGAATTGGCTCAAAGATCTGCATCAGTGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCAAGTAGTCCTCTGCTCAAGACACTCGGATCTCAAATGGGTACCCCAGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAGTGGAGGTTGCCAATTCTCAAGAGGAATCTACCATATCTGAGCAAACACCAAATGGAGAAATTGGGATGAAAAATTGCCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAGAGAAACTTCTAACTCCATCAAGGGTGTTGAAGTCAGTGAGGATTCAAATTCAAAGCGAACCAAGCCAAACGAGGGTGAGGGAAACGAAGATGGACAGGTAAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGATAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGTCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGACAGCCTTGTTTCAAAAGATGTATTTCAATCTAATAATTCTTTGGCAACACACCCAAATCCAACATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCATCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCAATGCAATTACCCCCCCTAAATGGGTTTAATGAAGTTGCCTCTCAGTTTCCATTAACATTCTGTGAGGAGGATCTGCACACCATTGTGCAGATGGGGTTTGGGCAAACTGCAAACTGGAAAACACCAATCCAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1752 0.4452 MENQFFINSGLSQTQHPLHFEPSPPPPPPPSSSSVPSWQSLSPTMGIQPTLLNCASEQTHDCFYNPNWEKSTDHALHFDSSALSSMVSSPAASSNPSSNMSNDNFIIRELVGRLGAIGSSDEIPQHSPHPLVVASSYMNNGSGSPNTSCYTTPLSSPPKVKTVQSLVNERLANLGGKSITLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSASVVENGGKLSRISSSPLLKTLGSQMGTPENKNSAIQDQEKVEVANSQEESTISEQTPNGEIGMKNCQDMTNSRKRKASSKGKTRETSNSIKGVEVSEDSNSKRTKPNEGEGNEDGQVKVEEESKAVEDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIDSLVSKDVFQSNNSLATHPNPTFPLDSSAQAFYGHQHQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEVASQFPLTFCEEDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVPQMKVEL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8191g00001 583 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 379 450 IPR036638 GO:0046983
Vium8191g00001 583 Gene3D - 378 453 IPR036638 GO:0046983
Vium8191g00001 583 CDD bHLH_AtBPE_like 371 456 - -
Vium8191g00001 583 MobiDBLite consensus disorder prediction 19 34 - -
Vium8191g00001 583 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 431 IPR011598 GO:0046983
Vium8191g00001 583 MobiDBLite consensus disorder prediction 324 372 - -
Vium8191g00001 583 MobiDBLite consensus disorder prediction 14 42 - -
Vium8191g00001 583 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 265 492 IPR024097 GO:0006355
Vium8191g00001 583 MobiDBLite consensus disorder prediction 249 372 - -
Vium8191g00001 583 FunFam Basic helix-loop-helix transcription factor 378 450 - -
Vium8191g00001 583 Pfam Helix-loop-helix DNA-binding domain 385 432 IPR011598 GO:0046983
Vium8191g00001 583 MobiDBLite consensus disorder prediction 249 296 - -
Vium8191g00001 583 SMART finulus 387 437 IPR011598 GO:0046983
Vium8191g00001 583 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8191g00001 Vium-Chr8191 30538 34061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8191g00001 1 542 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.230 1.17e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8191g00001 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8191g00001 - - gmx:100801233 894.419