Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8190g00001 GCAAGGGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGCTACTTTCTGTGGCTTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTGGCTTGATAAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCGGTAAAGGACAAGCCCACAGCAGACAGTGGAAGCAAATCTAGGAGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGATGAAGGATATGAAGAGGAGGATGACGAGCATAGTGAAACCCTGTGTGGGAGCTGTGGCGGAAATTACAATGCAGACGAATTTTGGATTGGTTGTGACATATGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCTTGAGGCGGGGCAGGCCCTAA 486 0.4712 ARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDKPTADSGSKSRSSTKRSSDGQVKSNPKFADEGYEEEDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8190g00001 161 PANTHER CPG BINDING PROTEIN 1 160 IPR045104 GO:0006355|GO:0042393
Vium8190g00001 161 SMART PHD_3 107 155 IPR001965 -
Vium8190g00001 161 ProSiteProfiles Zinc finger PHD-type profile. 105 157 IPR019787 -
Vium8190g00001 161 FunFam PHD finger alfin-like protein 100 156 - -
Vium8190g00001 161 MobiDBLite consensus disorder prediction 70 87 - -
Vium8190g00001 161 ProSitePatterns Zinc finger PHD-type signature. 108 154 IPR019786 -
Vium8190g00001 161 Pfam Alfin 1 56 IPR021998 GO:0006355|GO:0042393
Vium8190g00001 161 SUPERFAMILY FYVE/PHD zinc finger 96 159 IPR011011 -
Vium8190g00001 161 MobiDBLite consensus disorder prediction 59 100 - -
Vium8190g00001 161 Pfam PHD-finger 108 155 IPR019787 -
Vium8190g00001 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 155 IPR013083 -
Vium8190g00001 161 CDD PHD_AL_plant 107 157 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8190g00001 Vium-Chr8190 5 2095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8190g00001 1 160 Alfin-like Transcription Factor Family AT5G05610 77.019 5.46e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vium8190g00001 Alfin 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8190g00001 K26274 - gmx:100793126 311.612