Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium818g00008 ATGGCTACACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTTCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGAGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCCAAGGAGCGAAAATTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATATATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATCTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGGACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGAGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATTTGTGGTATTGATGTTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTTCGAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGATGAGCTAGAAGTTATTAGGCCACTAAATTGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAACAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAATCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAACTTATATGGCTATACATACATGCGCTTGGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATAAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGTTAAATGGAAGTGATCAGAAGGAAGATAGACCACCAAACTCTGTTGTTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCTTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGGATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATTGATGATGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAAACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAATAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTCGACCACAGGAAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGGTGCCATTTGCAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCATCCGTTATAAACTTATCAATACATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGAAGATGGCTTTAAAATTGGTCTGTTTATGGCAGAGAATCGTTTCAGGGAGGCAACAAGAATTTTTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGTCAGTGAAATGCATCACCATCAGGCTGACTCGATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCACTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCCCCTTTGACTTGAATGTGGAAAGTTCATGGGAAAGGGAGGTTTTGGAATATCCCACAGATTATGTTACTGGTTAA 5145 0.4105 MATPTKNLSQYEEGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAEQKDSAIPMDEDIKSGEHLATTQSQTEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDVQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVRAIETPGTSIMERTDIDELEVIRPLNCQKKLQGTNIFEDIQRKIWEERLKQAKERATAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGSDQKEDRPPNSVVVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQNNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDHRKNPSPTCNGLYFDQSLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPMSADRLDITLEFPKEESDVLALFPSVINLSIHGTDPTPSLSKQTGEDGFKIGLFMAENRFREATRIFEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDVSEMHHHQADSIVQSVPSLKDLRFDLTSFTTDEIGLTAVDTCFPFDLNVESSWEREVLEYPTDYVTG 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1229 1256 - -
Vium818g00008 1714 Coils Coil 963 983 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 31 57 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1604 1635 - -
Vium818g00008 1714 Coils Coil 1137 1157 - -
Vium818g00008 1714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 383 IPR014001 -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1636 1653 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1156 1171 - -
Vium818g00008 1714 Gene3D - 452 511 - -
Vium818g00008 1714 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 452 517 - -
Vium818g00008 1714 Pfam Myb-like DNA-binding domain 1332 1398 - -
Vium818g00008 1714 Gene3D - 717 973 IPR027417 -
Vium818g00008 1714 PANTHER HELICASE SRCAP-RELATED 33 1629 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 146 165 - -
Vium818g00008 1714 Pfam SNF2-related domain 223 495 IPR000330 GO:0005524|GO:0140658
Vium818g00008 1714 FunFam Photoperiod-independent early flowering 1 176 451 - -
Vium818g00008 1714 Coils Coil 1087 1107 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1 22 - -
Vium818g00008 1714 CDD DEXQc_SRCAP 206 428 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 58 102 - -
Vium818g00008 1714 Gene3D - 175 451 IPR038718 -
Vium818g00008 1714 SMART helicmild6 776 859 IPR001650 -
Vium818g00008 1714 SMART ultradead3 202 395 IPR014001 -
Vium818g00008 1714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 428 IPR027417 -
Vium818g00008 1714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 750 900 IPR001650 -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 117 139 - -
Vium818g00008 1714 Pfam Helicase conserved C-terminal domain 747 859 IPR001650 -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1 139 - -
Vium818g00008 1714 CDD SF2_C_SNF 735 870 - -
Vium818g00008 1714 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 717 966 - -
Vium818g00008 1714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 916 IPR027417 -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1156 1257 - -
Vium818g00008 1714 MobiDBLite consensus disorder prediction 1604 1653 - -
Vium818g00008 1714 Gene3D - 1315 1389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium818g00008 Vium-Chr818 11215 22666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium818g00008 696 889 RAD5 or RAD16-like Gene Family AT5G43530 31.132 1.87e-26 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium818g00008 SNF2_N 8.4e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium818g00008 K11661 - gmx:100794898 2926.73