Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium818g00007 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCAGACCGAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCGGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAAGATGCGCATGGAGATGTTATTAATGAACCTAAAGAAGCTGATGTTGTGGAGTATCAATCAGATGCTGCCGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGACGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCAAAATGAAATGGATCTTCCTATTGAGGAGTTACTCAAGCGTTATGCAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAGGAACAACTGGTGATGGTAAGAAAATATTAGCATCAGAAAATGGTGATGATCATTTATCTGTTAGCAAAAATGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGATGAAAGCAATGGTGATATGGCTACACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTTCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGAGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCCAAGGAGCGAAAATTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATATATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATCTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGGACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGAGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATTTGTGGTATTGATGTTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTTCGAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGATGAGCTAGAAGTTATTAGGCCACTAAATTGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAACAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAATCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAACTTATATGGCTATACATACATGCGCTTGGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATAAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGTTAAATGGAAGTGATCAGAAGGAAGATAGACCACCAAACTCTGTTGTTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCTTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGGATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATTGATGATGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAAACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAATAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTCGACCACAGGAAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGGTGCCATTTGCAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCATCCGTTATAAACTTATCAATACATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGAAGATGGCTTTAAAATTGGTCTGTTTATGGCAGAGAATCGTTTCAGGGAGGCAACAAGAATTTTTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGTCAGTGAAATGCATCACCATCAGGCTGACTCGATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCACTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCCCCTTTGACTTGAATGTGGAAAGTTCATGGGAAAGGGAGGTTTTGGAATATCCCACAGATTATGTTACTGGTTAA 6090 0.4085 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDAHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALQNEMDLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVGTTGDGKKILASENGDDHLSVSKNGTNNSSMVSGRRCDESNGDMATPTKNLSQYEEGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAEQKDSAIPMDEDIKSGEHLATTQSQTEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDVQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVRAIETPGTSIMERTDIDELEVIRPLNCQKKLQGTNIFEDIQRKIWEERLKQAKERATAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGSDQKEDRPPNSVVVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQNNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDHRKNPSPTCNGLYFDQSLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPMSADRLDITLEFPKEESDVLALFPSVINLSIHGTDPTPSLSKQTGEDGFKIGLFMAENRFREATRIFEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDVSEMHHHQADSIVQSVPSLKDLRFDLTSFTTDEIGLTAVDTCFPFDLNVESSWEREVLEYPTDYVTG 2029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium818g00007 2029 FunFam Photoperiod-independent early flowering 1 491 766 - -
Vium818g00007 2029 SMART helicmild6 1091 1174 IPR001650 -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1919 1950 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1471 1572 - -
Vium818g00007 2029 Pfam HSA domain 27 93 IPR014012 -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 156 188 - -
Vium818g00007 2029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 743 IPR027417 -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 373 417 - -
Vium818g00007 2029 CDD DEXQc_SRCAP 521 743 - -
Vium818g00007 2029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 698 IPR014001 -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 289 308 - -
Vium818g00007 2029 SMART ultradead3 517 710 IPR014001 -
Vium818g00007 2029 Coils Coil 1402 1422 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1951 1968 - -
Vium818g00007 2029 Pfam Helicase conserved C-terminal domain 1062 1174 IPR001650 -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1 33 - -
Vium818g00007 2029 Coils Coil 216 236 - -
Vium818g00007 2029 Gene3D - 1630 1704 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 189 214 - -
Vium818g00007 2029 Gene3D - 1032 1282 IPR027417 -
Vium818g00007 2029 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vium818g00007 2029 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 767 832 - -
Vium818g00007 2029 Gene3D - 767 826 - -
Vium818g00007 2029 Pfam Myb-like DNA-binding domain 1647 1713 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 252 274 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 346 372 - -
Vium818g00007 2029 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 152 214 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 252 454 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 432 454 - -
Vium818g00007 2029 Gene3D - 490 766 IPR038718 -
Vium818g00007 2029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1230 IPR027417 -
Vium818g00007 2029 CDD SF2_C_SNF 1050 1185 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1471 1486 - -
Vium818g00007 2029 PANTHER HELICASE SRCAP-RELATED 15 1944 - -
Vium818g00007 2029 Coils Coil 1452 1472 - -
Vium818g00007 2029 SMART bromneu2 23 94 IPR014012 -
Vium818g00007 2029 Coils Coil 1278 1298 - -
Vium818g00007 2029 Pfam SNF2-related domain 538 810 IPR000330 GO:0005524|GO:0140658
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1544 1571 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 461 480 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 315 337 - -
Vium818g00007 2029 MobiDBLite consensus disorder prediction 1919 1968 - -
Vium818g00007 2029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium818g00007 Vium-Chr818 11215 30656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium818g00007 541 813 RAD5 or RAD16-like Gene Family AT5G43530 29.503 6.41e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium818g00007 SNF2_N 1.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium818g00007 K11661 - gmx:100794898 3426.72