Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium818g00005 | ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCAGACCGAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCGGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAAGATGCGCATGGAGATGTTATTAATGAACCTAAAGAAGCTGATGTTGTGGAGTATCAATCAGATGCTGCCGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGACGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCAAAATGAAATGGATCTTCCTATTGAGGAGTTACTCAAGCGTTATGCAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAGGAACAACTGGTGATGAAAATGGTGATGATCATTTATCTGTTAGCAAAAATGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGATGAAAGCAATGGTGATATGGCTACACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTTCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGAGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAGGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCCAAGGAGCGAAAATTTAAAAGGCAAGGATGGTTGAAACCAAACTCATTTCATATATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATCTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGGACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGAGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTCAGTTCGTTTGATATTTGTGGTATTGATGTTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGCCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTTCGAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGATGAGCTAGAAGTTATTAGGCCACTAAATTGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAACAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAATCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCGCTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAACTTATATGGCTATACATACATGCGCTTGGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATAAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGTTAAATGGAAGTGATCAGAAGGAAGATAGACCACCAAACTCTGTTGTTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCTTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGGATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATTGATGATGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAAACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAATAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTCGACCACAGGAAAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGGTGCCATTTGCAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCATCCGTTATAAACTTATCAATACATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGAAGATGGCTTTAAAATTGGTCTGTTTATGGCAGAGAATCGTTTCAGGGAGGCAACAAGAATTTTTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGTCAGTGAAATGCATCACCATCAGGCTGACTCGATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCACTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCCCCTTTGACTTGAATGTGGAAAGTTCATGGGAAAGGGAGGTTTTGGAATATCCCACAGATTATGTTACTGGTTAA | 6069 | 0.409 | MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDAHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALQNEMDLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVGTTGDENGDDHLSVSKNGTNNSSMVSGRRCDESNGDMATPTKNLSQYEEGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAEQKDSAIPMDEDIKSGEHLATTQSQTEEHWESPHENLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDVQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVRAIETPGTSIMERTDIDELEVIRPLNCQKKLQGTNIFEDIQRKIWEERLKQAKERATAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGSDQKEDRPPNSVVVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQNNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDHRKNPSPTCNGLYFDQSLFTSIGQPSQNSLKKSSERVPFANLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPMSADRLDITLEFPKEESDVLALFPSVINLSIHGTDPTPSLSKQTGEDGFKIGLFMAENRFREATRIFEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDVSEMHHHQADSIVQSVPSLKDLRFDLTSFTTDEIGLTAVDTCFPFDLNVESSWEREVLEYPTDYVTG | 2022 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 308 | 330 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 252 | 284 | - | - | |
| Vium818g00005 | 2022 | Coils | Coil | 1445 | 1465 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1912 | 1961 | - | - | |
| Vium818g00005 | 2022 | Pfam | HSA domain | 27 | 93 | IPR014012 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 156 | 188 | - | - | |
| Vium818g00005 | 2022 | SMART | ultradead3 | 510 | 703 | IPR014001 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 285 | 301 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 152 | 217 | - | - | |
| Vium818g00005 | 2022 | SMART | helicmild6 | 1084 | 1167 | IPR001650 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 425 | 447 | - | - | |
| Vium818g00005 | 2022 | CDD | SF2_C_SNF | 1043 | 1178 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 189 | 215 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1464 | 1479 | - | - | |
| Vium818g00005 | 2022 | Gene3D | - | 1025 | 1275 | IPR027417 | - | |
| Vium818g00005 | 2022 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 482 | 736 | IPR027417 | - | |
| Vium818g00005 | 2022 | CDD | DEXQc_SRCAP | 514 | 736 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 386 | 447 | - | - | |
| Vium818g00005 | 2022 | Coils | Coil | 216 | 236 | - | - | |
| Vium818g00005 | 2022 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1058 | 1208 | IPR001650 | - | |
| Vium818g00005 | 2022 | ProSiteProfiles | HSA domain profile. | 22 | 94 | IPR014012 | - | |
| Vium818g00005 | 2022 | Coils | Coil | 1271 | 1291 | - | - | |
| Vium818g00005 | 2022 | Pfam | SNF2-related domain | 531 | 803 | IPR000330 | GO:0005524|GO:0140658 | |
| Vium818g00005 | 2022 | Pfam | Helicase conserved C-terminal domain | 1055 | 1167 | IPR001650 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 454 | 473 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1537 | 1564 | - | - | |
| Vium818g00005 | 2022 | Gene3D | - | 483 | 759 | IPR038718 | - | |
| Vium818g00005 | 2022 | Gene3D | - | 1623 | 1697 | - | - | |
| Vium818g00005 | 2022 | FunFam | protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 | 1025 | 1274 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 339 | 365 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1944 | 1961 | - | - | |
| Vium818g00005 | 2022 | Gene3D | - | 760 | 819 | - | - | |
| Vium818g00005 | 2022 | PANTHER | HELICASE SRCAP-RELATED | 15 | 1937 | - | - | |
| Vium818g00005 | 2022 | Pfam | Myb-like DNA-binding domain | 1640 | 1706 | - | - | |
| Vium818g00005 | 2022 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 738 | 1223 | IPR027417 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1912 | 1943 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 252 | 371 | - | - | |
| Vium818g00005 | 2022 | FunFam | Photoperiod-independent early flowering 1 | 484 | 759 | - | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 1464 | 1565 | - | - | |
| Vium818g00005 | 2022 | SMART | bromneu2 | 23 | 94 | IPR014012 | - | |
| Vium818g00005 | 2022 | MobiDBLite | consensus disorder prediction | 386 | 410 | - | - | |
| Vium818g00005 | 2022 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 526 | 691 | IPR014001 | - | |
| Vium818g00005 | 2022 | Coils | Coil | 1395 | 1415 | - | - | |
| Vium818g00005 | 2022 | FunFam | Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 | 760 | 825 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium818g00005 | Vium-Chr818 | 11215 | 30656 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium818g00005 | 534 | 806 | RAD5 or RAD16-like Gene Family | AT5G43530 | 29.503 | 5.57e-28 | 122 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Vium818g00005 | SNF2_N | 1.1e-69 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium818g00005 | K11661 | - | gmx:100794898 | 3433.65 |