Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium818g00002 ATGGACCTTCGCAAGCGTGGAAGGCCCGAACTCTCCTTCAGCCTCAACGGCGCCGTTAAGAAGACCAAGCAAGACTTGGAGTCCTTATCAGGTGGTGTAGGAAGCAAATCGAAGCCCTGTACCAAGTTTTTTAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCATTTCTTGCATTATGTTCCTGGTGGTTATAATGTGGTTGCCCATATGATGAATTTGAAACCTGCTGCTCCTCCTTCAAGAGCTGTTGCTGCACCACTTCCGGTATCTAATGGCTCTACTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCACGGTGAATGGGAACTTGGTAAACCTATTGCTCCCTCAATTGATGATCATCGTCCTTTGGGACCTCCATCAGCTGGTCGAATGGCTGGTCGAATTGAGCCTCCTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCATGAAACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCTGCCCCTCCCAAATCCACCCCTGGTGTTCCTGGTGCCCCTGCTCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGCTGAGTTGCGCAAGCAGGGGGTATGA 882 0.483 MDLRKRGRPELSFSLNGAVKKTKQDLESLSGGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAHMMNLKPAAPPSRAVAAPLPVSNGSTPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPSAGRMAGRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRKQGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium818g00002 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 155 236 IPR036612 GO:0003723
Vium818g00002 293 SMART kh_6 165 235 IPR004087 GO:0003676
Vium818g00002 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
Vium818g00002 293 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Vium818g00002 293 Gene3D K Homology domain, type 1 164 257 IPR036612 GO:0003723
Vium818g00002 293 CDD KH-I_AtC3H36_like 169 234 - -
Vium818g00002 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Vium818g00002 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Vium818g00002 293 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vium818g00002 293 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Vium818g00002 293 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Vium818g00002 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Vium818g00002 293 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vium818g00002 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Vium818g00002 293 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Vium818g00002 293 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vium818g00002 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Vium818g00002 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 145 IPR045877 GO:0003729
Vium818g00002 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Vium818g00002 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Vium818g00002 293 SUPERFAMILY CCCH zinc finger 96 129 IPR036855 GO:0046872
Vium818g00002 293 Gene3D - 91 130 - -
Vium818g00002 293 Gene3D - 258 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium818g00002 Vium-Chr818 1673 5927 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium818g00002 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium818g00002 - - pvu:PHAVU_007G259300g 561.992