Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8186g00005 ATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGCTGAGAGCAATCACTGGAGTGATGCTGAATTAGTGGACAAAATTGTTAAGAGCGTTGTTAATTTACCGGTCTTGTCTGCTACTGAATTTCCAGTAGAAATATTACAATCCCGCGTGGATGCTATGTTTCTAACTATCAAAAATAAATCCACTCGTGAAGTTTGTATGATAGAGATATGGGGAGACCAAGGACATGGTAAAACAACTCTTCCCAATGCGATCTACAATCAAATTCATTGTACATTCAAGGAGAAAAGTTTCATTGAAAATATTTTACAAGTTAGCGGAATAAGAGGGTATCTTCCTTTACTGGAAGAACTTTATGAATCGGGAAGAATCATTGATTGGAAAGAAAGTATGATTCGGGAAACACTTTCTGGGAAAAGGGTGCTCATTGTACTTGATGATGTGCCTTACAATTATGAACTTTTAGCACTATGGACTTATAATCATTATTGGTTCAGTGAAGGAACTGTAATAATCATTACAACAAGCGATGAAGACCTACTGATTTGCCAGCGGACAGATTCTTTATTTTGGATAGAGCGAAGGAAAGGAGAGAGGTCCCTGGTTTATAGTTGGCCATTTAGATCTTGCACACAATCATACGAAAGCCCATACAAAATCCCATACGGAAGCCCATACCAAAGCCTCGCACACATAGATCTCGACACAACATACGTACATCTCCACACTTTGTTAATCCATGACTTCTTCTATAACTGCTATTGA 783 0.3895 MSRWSHALTKAANFFGWAESNHWSDAELVDKIVKSVVNLPVLSATEFPVEILQSRVDAMFLTIKNKSTREVCMIEIWGDQGHGKTTLPNAIYNQIHCTFKEKSFIENILQVSGIRGYLPLLEELYESGRIIDWKESMIRETLSGKRVLIVLDDVPYNYELLALWTYNHYWFSEGTVIIITTSDEDLLICQRTDSLFWIERRKGERSLVYSWPFRSCTQSYESPYKIPYGSPYQSLAHIDLDTTYVHLHTLLIHDFFYNCY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8186g00005 260 PRINTS Disease resistance protein signature 141 155 - -
Vium8186g00005 260 PRINTS Disease resistance protein signature 73 88 - -
Vium8186g00005 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 192 IPR027417 -
Vium8186g00005 260 Pfam NB-ARC domain 56 186 IPR002182 GO:0043531
Vium8186g00005 260 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 193 IPR044974 GO:0006952
Vium8186g00005 260 Gene3D - 33 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8186g00005 Vium-Chr8186 40038 41483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8186g00005 65 199 WRKY Transcription Factor Family AT5G45050 31.915 6.40e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8186g00005 - - vum:124846524 542.732