Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8186g00004 ATGATAGAGATATGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGACATTCAAGGAGAAAAGTTTCATTGAAAATATTTCACAAGTTAGCGGAATAAGAGGGTATCTTCGTTTACTGGAACAACTCCTTTTAGACGTCCTAAAACAAAAGGTGGAGATTCCTAGCATTGATGTGGGAAGAAGAATGATTCGGGAAACACTTAATGGAAAAAGGGTGCTCATTGTACTTGACGATGTTTCATACTTTAGTTTACTCGACCTATGGAACTGTGGTAAATGGTTCGGCGAAGGAACTGTAATAATCGTTACATCAACATTTGAAAGAGTGCTGAAAGATCATGCTAATTCTTTCTTCTGGGTAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTCTCAGTTGGCATGCATTTATAGAACCAAAACCAAAAGAAGAATACTATTACCTTGCAATAAGAGTAGTTAGTTATTGTGGAGGACTACCACTAGCTCTTGAAGTCGTTGGAAGTACTTTATTTGAAAAGACGAAAAAAGAATGGGACACTATATTGTCAAAATTTGCGATAGTTGGGAGGCATCGTGTTTCAGAGATAATAAAAATAAGCATTGAAGGTTCACTGAATGAAATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTAAGAGCAGAGCCTACGTTAGGAAGATCCTAAACGGTTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTTATCGAGCGTAACCTCATCACAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAAAAATCGGAATACAAATTATTCAAGAAAATTTTGTAAAGGATCTTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATACAAAATATGGGACAGAAGACATGCAGTGGATGCCTGTGAAACTGCCTTCAGTTCTCATTGCCTTAAAAAGTGTACAACCGACTGTAAATTCTCAATACCTTATTAAGAAACTAAGATGGATCAGTTTGCATGCGTTTTCTTCAGAATGTCTACCTAACAACTTTTATCAGCATGATGCAATAGCTATTGATTTAAAGCGCAGTCTTCTCCGATTTGTCTGGAAAACACCTCAGGTTATGAGATCGGTGAAAGTCCTTAACCTCAGTCACTCCAAGTATTTAACCACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTCAAATATTGTTCAAGATTGCGCAAACTACACCCATCAATTGGATCACTTAACAGTCTTATACTCCTAAATTTGAAAGACTGTACAAGTCTATACAATCTTCCAACAGAGATATATGACTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAATATTGACATAAAGGATAAAGATATAGCAAAGTTGAAATCCTTGCTAACTCTAATTGCTGAAAATACAGCTGTCAAACATGTGCCTTTTTCAATTGTAAACTCAAAAGACATTGGATATATGTCCCTACGAGGATTTGAGGGATTATCTCATAATTTTTTTCCTTCTATCATTCGGTCTTGGATGTCGCCAACAATGAATCCCATCTCTTATATTCATTCGTTTTGCGAGGATATGGAGGACAATACGATTGATATTGCACCATTGCTTAGCACCCTTTCAAATATTCGAAGTATTTTGGTAGCATGTGACACCGAATTTCAATTAACTAAGCAAGTCAAAAATATTTTGGTTGAATATTTTGCAAATATTACACAATCAGGAATTTCAAAGCAGTACTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGCGAAAACATATATGAGGTATTGTCAAGCAGTGAGTGTGGTGATGTTTGTCTCCCAGCTGTGAATGATCCTTATTGTTTGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCGTTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTGTTTATTTATCAACTCCTAAGATCATTGAACCTGAATTTACTACTGTCGTAATTGTTAATTACACAAAGTGTACATTCCATATACACAACCATGGCACAGTAATTTCCTTTAAAGATGAAGATTGGCAAGACATAATGTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGCGAATTTCGGCAATGGATTGGCGGTCAAGAACACCGCTGTGTATCTGATATGTGGTGAATCAAAGAACATGAAAAAAACGTTTGAGGCAAAGAAACATGTCTCATTAGATTCGTAA 2304 0.3689 MIEICGEEGSGKTTLAKAIYNQIHWTFKEKSFIENISQVSGIRGYLRLLEQLLLDVLKQKVEIPSIDVGRRMIRETLNGKRVLIVLDDVSYFSLLDLWNCGKWFGEGTVIIVTSTFERVLKDHANSFFWVERMNAEESLELLSWHAFIEPKPKEEYYYLAIRVVSYCGGLPLALEVVGSTLFEKTKKEWDTILSKFAIVGRHRVSEIIKISIEGSLNEMEKDIFLDICCFFVGKSRAYVRKILNGCGVDADIGIRVLIERNLITINKNNKFGMHPLLQKIGIQIIQENFVKDLGKNRRLWFDKDTKYGTEDMQWMPVKLPSVLIALKSVQPTVNSQYLIKKLRWISLHAFSSECLPNNFYQHDAIAIDLKRSLLRFVWKTPQVMRSVKVLNLSHSKYLTTTPDFTGLPSLEHLIFKYCSRLRKLHPSIGSLNSLILLNLKDCTSLYNLPTEIYDLKSLRTFILSGCSNIDIKDKDIAKLKSLLTLIAENTAVKHVPFSIVNSKDIGYMSLRGFEGLSHNFFPSIIRSWMSPTMNPISYIHSFCEDMEDNTIDIAPLLSTLSNIRSILVACDTEFQLTKQVKNILVEYFANITQSGISKQYFRCSLIGVGAYHQFFNAVSENIYEVLSSSECGDVCLPAVNDPYCLAHMGEGHSVSFVVPEDGDMKGMILCVVYLSTPKIIEPEFTTVVIVNYTKCTFHIHNHGTVISFKDEDWQDIMSNLESGDNVEIFANFGNGLAVKNTAVYLICGESKNMKKTFEAKKHVSLDS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8186g00004 767 SUPERFAMILY L domain-like 338 529 - -
Vium8186g00004 767 Gene3D Ribonuclease Inhibitor 322 581 IPR032675 -
Vium8186g00004 767 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 474 IPR044974 GO:0006952
Vium8186g00004 767 Gene3D - 1 127 IPR027417 -
Vium8186g00004 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 227 IPR027417 -
Vium8186g00004 767 Pfam NB-ARC domain 2 199 IPR002182 GO:0043531
Vium8186g00004 767 Gene3D - 132 214 IPR042197 -
Vium8186g00004 767 PRINTS Disease resistance protein signature 167 181 - -
Vium8186g00004 767 PRINTS Disease resistance protein signature 429 445 - -
Vium8186g00004 767 PRINTS Disease resistance protein signature 1 16 - -
Vium8186g00004 767 PRINTS Disease resistance protein signature 76 90 - -
Vium8186g00004 767 SUPERFAMILY "Winged helix" DNA-binding domain 203 304 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8186g00004 Vium-Chr8186 36757 40001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8186g00004 2 488 WRKY Transcription Factor Family AT5G45050 29.236 2.25e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8186g00004 - - vum:124837950 1098.57