Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8186g00001 ATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAAAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACTGTAAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAGTGGAGAGCACTGAGATTGGATACTGGAAAATACTCTTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTATACAACGCCTCAAACAATGAGCTTGTGCGTACTCAGACCCTTGTCAAAAGTGCTATTGTTCAGGTTGATGCCGCTCCCTTCAAACAGTGGTATCTTCAGCACTATGGTGTTGACATTGGTAGGAAGAAGAAGACAGCTGCAAAGAAGGATTCCGCAGAGGAGGGTGACGCTGCAGCAGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAAAGAAAACTAGAAAAGCGCCAGAAGGATCGCCAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGTCGTTTACTTGCTTGCATTTCCTCTCGACCTGGTCAATGTGGCAGATCTGATGGCTACATTCTGGAAGGTAAAGAGTTGGAATTTTACATGAAGAAACTCCAGAAGAAGAAGGGGAAAGGTGCTGCCTGA 657 0.4734 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGKYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGDAAAAEEAKKSNHVQRKLEKRQKDRQLDAHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8186g00001 218 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Vium8186g00001 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Vium8186g00001 218 MobiDBLite consensus disorder prediction 1 38 - -
Vium8186g00001 218 FunFam 40S ribosomal protein S8 32 161 - -
Vium8186g00001 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vium8186g00001 218 MobiDBLite consensus disorder prediction 11 26 - -
Vium8186g00001 218 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vium8186g00001 218 Gene3D - 27 213 - -
Vium8186g00001 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vium8186g00001 218 CDD Ribosomal_S8e_like 5 197 - -
Vium8186g00001 218 MobiDBLite consensus disorder prediction 131 163 - -
Vium8186g00001 218 FunFam 40S ribosomal protein S8 109 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8186g00001 Vium-Chr8186 2236 4692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8186g00001 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.466 8.00e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8186g00001 K02995 - gmx:100794937 369.007