Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium817g00005 ATGATTGAGATGGGGTCGTGTGGGAGATCTGCTACCGTTAATGATCCCTCTGGAGGGTCTGTTATTGAGCAGCATTTGTACTCAGAGGTTGCGGAGCAGGTTGTTTCTGTGCAGGAGTCTTGTTTGGAAGTGGCCTGCAATGTTGTGGACTCTAATGCTGACCTCTCCACTGTGACCGATGGTTATGTGGGAGAGGACCTTGTGGGTTCTGCAAGGTGTCTAGATGAGGGGTCTTGTGATGCTCTGGGTTTGGCAAGTGAATGTGAAAATGCTGATTTGTTGTCACTGGAGAAACCCGCTGAAGATGATTGTCTGAATTGTTTGGGGGTTTCTTATGGGGGCATTGAAGTTCCCTGTGCTAGCAGTGGCCCTGAGGGGAATTTTCAGGGTGAGGAAATCTTTGATCTGCGGTCGCGGCCCCTGACTACTGATGATTCCCAGAGGCTTTGTGCTCAGCAGGATGGGCAGAAAGATGATAAGAGCCACGTGTCACCTGCAGCAGGAGATGAGTCCCTCGTTGTGGGAGGCAAAATCGATGACACAGATCTTCTTGGTGACGTTTTCAATCATGTACTTGATTTCAGGGACTCTGAAATGTCTTTGGAATTAGAATCTGTGGCTGACTTGTTAGTTGATTGCAACCAGCAAAATGAGCAGCAGGAAATTATGAGAAATGCAGATTCCTTGTTCAATGTTGTGGAAAAATGTGATAATCTAATTGGGACAGAAGCTGATGGATGCAGGCAGATATCTCCTACTGCGGATATGGAAGTGCCATCTGGCGCACTATGTGCAGATACCGAAGTAGAGAGCACAAGTGATCCGAAAGATGGTGAGGTCCATAATAGTACTTGTGAAGAAAAGGTTAAATCTTTTGTTGATGAAGAAATCATTGTCATTAATTCATGTGTAAAAATATCATCCTCTCCAGGTTGCCATGGGACTGTTGAGAGCTCATCTGTAGATTCTCCTTGTGAGCCTGCCTTGTTGGATCCAGGTTGTGAAATGAAGAAAGATGTATTACAAATAGAAGATGCTTTCTGTAAATTGAAGGACTGTTCCTCAGAAGAAACTAGCAACTCTACCTTTAGAGAGCCGTTTTCTCCAGAATCAGGCCTGCCCTCGGTTGCTTCAATTGCCAACTGCTCTTCAAAGGATGTTTCTGATCTCCATTTTAAGGGTGATGATGTTTCTACTCCTACTGCTACCAATAATGCTGTGGACGATCCAGGGCAGATGGTTAATGATGGAAAAGAAGCACTTAATGTTGATTGTATCACTGAAAGCATTTCATTACTTTCTCAAAGGAATAGTCGAAGAAGTAAAGTAGGCCGCAAGACACAGACCAAAAAGACTTCAAGAAGAGGCAAGAACAAAACCAAGGTGACATGTCCAAATGGGGATTACATGAAGTTATATTCAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGGAATATTGAACATTTTTTTGAGCACTATAATGAGCACGCAGTTGGTGAAGCTGTATGTCAAGAATTTGGGAAGGCAAGAAGCAAGCGTCAAAGTGGGAAAACAGTTAAGAATAATGCAAGTACTGGCTCATTGAATTCAGAACAGAAGTGTCCTGTTTCAACCACCCGTGTTCGTCTAAAGATCAAATTTGGTAAAGAATCCGATTTAAGTTGCTCAAATGTCTTGACTCCTGAGTCTGTTGATGGCTTGGCTTCTGCTTCCTACTTGGAGTCTGGTTCAGCTTCTCAGAAAATAGCCAGCAATCTCGAAGATAAAATGTTGAAAGTGGTGACATTGGGCAATACAGAATCTTTCAACAATAACGTGGATAAGGATGATCTTGTTCGAAATGGACAAGTGGCTAATAGCCCCATAGAAGGACATACTGAAATAACCGAGAAGGCAGATGGAGATGTAGAGGAACATTGTCTTGCAGCTCCTCCAGAGAAGGTGGTTGAGGCACTGATTGAACCTATCAACAACAAGGGTATGGATCCTGGAACTTCACCTGATTCTGAAGTGATCAATTCAATTCCCGAAGTCCATGTTGGAGAGAGACATGAAGATTTACATGATGCTCTTTTAGGTTCTTCTAAAGTGTTAAATTCTAAAGTGGATGCCACTGTAAGTAGAAGAGGGAAGAAGAAAGACAAACTTATCAGTTCAGGTATTTGTATCACTGAAGATGAATCTCAAGGTCCACCTAGGAACCGTAGACGGAAGCAGTCAAAGAACCGCAGGGGTAAGAAAAATGGTACGGGTGCAATTAGCTCTTTGGATTTGTCTACTCTCACTCAGATAAGCAAATCTACGACCAGTAAAGAATTGTGCCCTGAATCTTTGTCCCTTTCTGGAGAGACTGAACTTGGACGCACTGCTGAGGCTTTGAAAGTTAAAAATGACATGGACATTAATACAAGTTGCAAACCATCAGTTGACAATGGATTTTCAGAATCTCAGGTTTCTGAGAATATGCCGTCTTCTGCAAGGCCTTTGGGTCGTAAACTACCTAAAAGTCTTAGACCCAGTAAAGTTAGCAGGACCAAATTTAAAGCTTCTGACTCGGGGGACAGGAAAAAGACTACATGTACACGAAAGGAGAAACAGAAAAAGCCAATTGTTAAGTCTGAAGTCAAGAGAAAAGGTGCCTCTCTTAAAATTACATGTGAAATGGAAGATCGCCCACATGCAGAAGCAAATATTGGAAATCATAAACTGGATGCTGTCAGAAAAATTAATGCCGAGGACAACAAAGTATCAGTCAACGTATCTAGTTTGGACACGCTGTCTGGTGTTGGACTGGGTGGGCAACTTCCGTCTCCCCGTAATGCGTGGGTGCGATGTGATGATTGTTACAAATGGAGGCGAATTCCAGCTGTGCTTGCAGACCTAATTGATGAAACTAACCGTACCTGGACATGTAAGGACAGCAGTGATAAAGCTTTTGCTGACTGTGCTGTTCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCGGGTGACGAAGATGCATATGAAGGCTCCAAAAATTTTAAGGAATTAGAATATCGGCCTCCATTTGTTTTCCAGGGGTCAACTTTTACCCATATATTCACCAATGAATTCCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAGGCACCTCAAGAAGGAAAGTTCGGCTGTGGGGATGAATGCCTAAATCGGATGCTTAATATTGAATGTGCGCAAGGAACATGTCCGTGTGGGGACCGTTGTTCTAACCAGCAGTTCCAAAAACGCAAGTATGCTAGCCTGAGGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCACTTGGCAATGTTGCTAAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAACGTATGAGGCACGGCAAAGAGAATATGCTTTGAAGGGTCATCGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTAATAGATGCAAGTGCTAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTAGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCACTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGACTACAACTATGTAAGGGTTTTTGGTGCTGCAGCAAAAAAATGTTATTGTGGTTCACCTAGTTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTGATAGTTCAAAGTGATTCAGAAGAAGAATTTCCAGAACCTGTTATGCTTACGAGAGATGGTGAAATTGAAGAGGCACCCAAGTATTTTAATAATGATGATACAGAATCTGCTAGAATTATGTTAAAAGGCAGGGATGTATTGGAAAAGTCGACAAGCGCTATAGATTCAGATGGTTCTCCAGAAAAAGAAAGTTCCATGAACCCTGCCTCTGCTGTTTCTCTGTTGCACAGCTCAGCAGAAATGGATGATTCAAAGGGCAAGTTACCATCTGCCATTCGAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTGCCGTACAAGGATATGAAAAGGAAAAGGAATCAGAGTTTGCAGACAAAACTTCTTCCACTCAAAGATTAGAGACTACTTCTCCCCTTACAGCTGCTAGCAAAATGTTATCTAATTCGACTGGTAGTAATAGGGAATCCAAGTCTGAAATAATTGAAGGCAAGAAGAATCCCAAGTTAAATGGTTCTGTTAAAAAGGGAAAGGTCCATACTAGTCCTCCAAATGGCCTTAAAGCCGAGGTGACAGCCAATCGATTGCAGTTGTCATCTGTCAAACATAAAAAGTTTGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAGGATGCTACCAAAGGGTACTTGAAGCTTTTGTTTCTTACTGTGGCATCTGGTGATAGAAGCAACGGTGAAGCAATTCAAAGTAATCGAGATCTTTCCATGATACTTGACGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATTATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTGAAGGTCTTAGAGTACCTAGCAGCAAGCAAGATTTTGACACCTGAACAGATTAATGGTGGTCCTCCGTGTCATGGGATGGAGAGCTTTAGGGAGTCAATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGTTTCCCAGACCCAACAGAAAACATGGCTATTTGGACAGGGATGATAATAGAATGGAATCTCATAGAACTTTCAATGGTAACAGATTTTCAGCATCACACTCTCATAGACATGAACAGGATTTAAGGGCTGCAGAAGCAATGGATTGTAGTCAGCAGTCTATGCACGTGACAACTCCAGTAGATGCTGATACCCAGGAAAGCTGTCCTGCCCACTCTGTAGATGGGGTTGAAATCAAAGGACCTAAAAAACGGAAGCGCAAGAGCCGATGGGATCAACCAGCGAAGTCAAACTCACTTTCTGATGCCGTTATGAGCTCCGTTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCAATGGGTCCAATAAATGCTTCTTCCCTAAACTCTGGCAATCTTGTATTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATTTAGTAGTTGGTCATTCAAAAAGGAAATTTAATTCTCGCTTGCCTGTGGCTTATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATACTGAATTTCCAGAGCGCTGGGTCACTGCACCTGGCATACCTTTCGTTCCATTTCCTCCACTACCCCCATATCCTCGAGACAATAAAGACTCTCAACCTTCTAATAATTATAGTGCTATGATAATCGATCAGCCTGCTGAAGCTATGACAAGAGATCACTCTGCTGAAGTCAAGGAGGGCGATAACAGTAGTATGGTCACTTGTTGCGCAGATGATATGATTCCCAGCACAACTAGTGCTAACCCTGAAGAGTCAAACCTTCTGTTTGAGGACAACGAAGCCAAACGAATGAAGGGTGACTCCCATGATTTGGTAACGAAGTACTATAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCCGGAGGAATGCATGGAAATGTAATGAGAACAACTCTAATGGTGATATGTGCAGTATAGATGTAGATGTACCAAAAGAGTCGGAAGATACTTGTGATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 5970 0.4251 MIEMGSCGRSATVNDPSGGSVIEQHLYSEVAEQVVSVQESCLEVACNVVDSNADLSTVTDGYVGEDLVGSARCLDEGSCDALGLASECENADLLSLEKPAEDDCLNCLGVSYGGIEVPCASSGPEGNFQGEEIFDLRSRPLTTDDSQRLCAQQDGQKDDKSHVSPAAGDESLVVGGKIDDTDLLGDVFNHVLDFRDSEMSLELESVADLLVDCNQQNEQQEIMRNADSLFNVVEKCDNLIGTEADGCRQISPTADMEVPSGALCADTEVESTSDPKDGEVHNSTCEEKVKSFVDEEIIVINSCVKISSSPGCHGTVESSSVDSPCEPALLDPGCEMKKDVLQIEDAFCKLKDCSSEETSNSTFREPFSPESGLPSVASIANCSSKDVSDLHFKGDDVSTPTATNNAVDDPGQMVNDGKEALNVDCITESISLLSQRNSRRSKVGRKTQTKKTSRRGKNKTKVTCPNGDYMKLYSEAARKKRSCFSKPARSSIWGLIGNIEHFFEHYNEHAVGEAVCQEFGKARSKRQSGKTVKNNASTGSLNSEQKCPVSTTRVRLKIKFGKESDLSCSNVLTPESVDGLASASYLESGSASQKIASNLEDKMLKVVTLGNTESFNNNVDKDDLVRNGQVANSPIEGHTEITEKADGDVEEHCLAAPPEKVVEALIEPINNKGMDPGTSPDSEVINSIPEVHVGERHEDLHDALLGSSKVLNSKVDATVSRRGKKKDKLISSGICITEDESQGPPRNRRRKQSKNRRGKKNGTGAISSLDLSTLTQISKSTTSKELCPESLSLSGETELGRTAEALKVKNDMDINTSCKPSVDNGFSESQVSENMPSSARPLGRKLPKSLRPSKVSRTKFKASDSGDRKKTTCTRKEKQKKPIVKSEVKRKGASLKITCEMEDRPHAEANIGNHKLDAVRKINAEDNKVSVNVSSLDTLSGVGLGGQLPSPRNAWVRCDDCYKWRRIPAVLADLIDETNRTWTCKDSSDKAFADCAVPQEKSNAEINAELGLSDASGDEDAYEGSKNFKELEYRPPFVFQGSTFTHIFTNEFLHRSHKTQTIDEIMVCHCKAPQEGKFGCGDECLNRMLNIECAQGTCPCGDRCSNQQFQKRKYASLRWFKCGKKGYGLKALGNVAKGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPSCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTRDGEIEEAPKYFNNDDTESARIMLKGRDVLEKSTSAIDSDGSPEKESSMNPASAVSLLHSSAEMDDSKGKLPSAIRVEEISQQMEDVTSKPMPAVQGYEKEKESEFADKTSSTQRLETTSPLTAASKMLSNSTGSNRESKSEIIEGKKNPKLNGSVKKGKVHTSPPNGLKAEVTANRLQLSSVKHKKFEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTPEQINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWFPRPNRKHGYLDRDDNRMESHRTFNGNRFSASHSHRHEQDLRAAEAMDCSQQSMHVTTPVDADTQESCPAHSVDGVEIKGPKKRKRKSRWDQPAKSNSLSDAVMSSVGESQNIHEDVPPGFSCPMGPINASSLNSGNLVLQNASRSGCPSDLVVGHSKRKFNSRLPVAYGMPWSVAQQYGTPHTEFPERWVTAPGIPFVPFPPLPPYPRDNKDSQPSNNYSAMIIDQPAEAMTRDHSAEVKEGDNSSMVTCCADDMIPSTTSANPEESNLLFEDNEAKRMKGDSHDLVTKYYRQQKWNNSKIHRPWFRRNAWKCNENNSNGDMCSIDVDVPKESEDTCDAEDAICREEKGGNNIY 1989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1364 1452 - -
Vium817g00005 1989 Gene3D - 947 1008 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 857 883 - -
Vium817g00005 1989 PANTHER SET DOMAIN PROTEINS 456 1730 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 735 769 - -
Vium817g00005 1989 SMART shorttest3 1063 1114 IPR006560 GO:0005634|GO:0042054
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1317 1335 - -
Vium817g00005 1989 FunFam Histone-lysine N-methyltransferase 947 1008 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1378 1392 - -
Vium817g00005 1989 Gene3D SET domain 1017 1265 IPR046341 -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 821 883 - -
Vium817g00005 1989 ProSiteProfiles AWS domain profile. 1063 1113 IPR006560 GO:0005634|GO:0042054
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1638 1656 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 821 837 - -
Vium817g00005 1989 Pfam SET domain 1126 1232 IPR001214 GO:0005515
Vium817g00005 1989 SMART PostSET_3 1240 1256 IPR003616 -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1638 1669 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 439 458 - -
Vium817g00005 1989 ProSiteProfiles SET domain profile. 1115 1232 IPR001214 GO:0005515
Vium817g00005 1989 ProSiteProfiles Zinc finger CW-type profile. 949 1003 IPR011124 GO:0008270
Vium817g00005 1989 SMART set_7 1115 1238 IPR001214 GO:0005515
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1692 1740 - -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1393 1421 - -
Vium817g00005 1989 CDD SET_SETD2 1114 1256 IPR044437 GO:0010452|GO:0046975
Vium817g00005 1989 FunFam Histone-lysine N-methyltransferase 1014 1271 - -
Vium817g00005 1989 Pfam CW-type Zinc Finger 955 1001 IPR011124 GO:0008270
Vium817g00005 1989 ProSiteProfiles Post-SET domain profile. 1240 1256 IPR003616 -
Vium817g00005 1989 MobiDBLite consensus disorder prediction 436 461 - -
Vium817g00005 1989 SUPERFAMILY SET domain 1043 1253 IPR046341 -
Vium817g00005 1989 Pfam AWS domain 1078 1112 IPR006560 GO:0005634|GO:0042054
Vium817g00005 1989 MobiDBLite consensus disorder prediction 1315 1335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium817g00005 Vium-Chr817 43282 60162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium817g00005 1098 1255 C2H2 Transcription Factor Family AT2G23740 32.597 1.31e-19 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium817g00005 SET 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium817g00005 - - gmx:100795379 2914.02