Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium817g00004 ATGGGGAGGGGAAAGATTGAGATCAAAAGGATTGAGAACTCGAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGCGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCCTCCACCACGCTGATTGACATCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCCAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAAGACATTACGTCACTGAATTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGTGTCCGTGAGAAAAAGGTGGAAGTGCACAGGATGTTCAAGAGAAATCAGCAACATTTGGCATTAGAAAGCGTGGGAAACATGCATGGACAGTGGATTTGA 501 0.4491 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKVEVHRMFKRNQQHLALESVGNMHGQWI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium817g00004 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vium817g00004 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Vium817g00004 166 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vium817g00004 166 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Vium817g00004 166 Coils Coil 77 111 - -
Vium817g00004 166 Pfam K-box region 81 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium817g00004 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium817g00004 166 ProSiteProfiles K-box domain profile. 84 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium817g00004 Vium-Chr817 30107 32430 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium817g00004 1 143 MADS-box Gene Family AT5G20240 69.930 3.92e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium817g00004 K-box 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium817g00004 K09264 - gmx:100795861 313.538