Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8177g00005 ATGGCGGCGCCGAATAGAATCGAACGCGCTCACCAGATGTACCGTGAAGGACGATACGAAGAGGCGTTAGGGTTCTACACGGAGGCAATCGCCATGGCTAAGACTAACCCTCAGAAGATCGCTTTGCATAGCAATCGAGCCGCGTGCTTTCTGAAGCTTCACGATTTCAAAAAGGCAGCAGAAGAGTGCACCTCGGTGCTTGAGCTTGATCACAAGCACAGTGGGGCATTGATGCTACGGGCTCAAACGCTTGTCACCCTGAAGGAGTATCATTCAGCTCTTTTTGATGTCAACAGACTGTTAGAGTTGAATCCATCTTCAGAGGTTTATCAAAATCTTCAAGCTCGCTTGAAGACACAGTTGTCACTTGCTCCAATACCAGAATCAGAAGAGGAGTTTGAAGAACAGGAAGACGAGGAGTTTGAAGAACAGGAAGACGAGGATCCTGAAGTGATACTTGAAGAGGAGAATGAAAGAGAAGAGATGGGAGACAAATATTCTTCGATTTCTAATATTATAACAGAACAGAAGGATGAACTTGGTAAAGGCATTGTTATTACCGAATGTGCTGCTCATGAAGCAGAGCCCAAGTTTTCAATGAAGCAAGGGGGAAACCAAAACTATGACTCTAAGAAGTTCATAGCAGATGCTATAGCTCCTAAAGCACCAAGCAGGGAATCCAATGAGGAACATTCAAAAGGATGGCAAACTATTCCAAAACCAAAAGGACATTCAGCTCTAGACTACGCACGGTGGGATAGTGTTGAAGATGATTCTAGTGATGATGATGGTGACAGTGAAGAAGAAGAATCTTTGCCTCAATACCGGTTTCGTGTAAGAACAGTTGGTGTACGTCCTGTAAAGTGA 867 0.4452 MAAPNRIERAHQMYREGRYEEALGFYTEAIAMAKTNPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLQARLKTQLSLAPIPESEEEFEEQEDEEFEEQEDEDPEVILEEENEREEMGDKYSSISNIITEQKDELGKGIVITECAAHEAEPKFSMKQGGNQNYDSKKFIADAIAPKAPSRESNEEHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDGDSEEEESLPQYRFRVRTVGVRPVK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8177g00005 288 MobiDBLite consensus disorder prediction 128 149 - -
Vium8177g00005 288 Pfam Anaphase-promoting complex, cyclosome, subunit 3 17 94 - -
Vium8177g00005 288 SUPERFAMILY TPR-like 7 121 IPR011990 GO:0005515
Vium8177g00005 288 MobiDBLite consensus disorder prediction 196 275 - -
Vium8177g00005 288 MobiDBLite consensus disorder prediction 125 149 - -
Vium8177g00005 288 Gene3D Tetratricopeptide repeat domain 2 149 IPR011990 GO:0005515
Vium8177g00005 288 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 288 - -
Vium8177g00005 288 SMART tpr_5 40 73 IPR019734 GO:0005515
Vium8177g00005 288 SMART tpr_5 74 107 IPR019734 GO:0005515
Vium8177g00005 288 SMART tpr_5 3 36 IPR019734 GO:0005515
Vium8177g00005 288 MobiDBLite consensus disorder prediction 223 237 - -
Vium8177g00005 288 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8177g00005 Vium-Chr8177 19429 23124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8177g00005 2 121 Calmodulin-binding Proteins AT3G25230 32.576 3.17e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8177g00005 - - vum:124846515 488.804