Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8177g00004 ATGGCGGCGCCGAATAGAATCGAACGCGCTCACCAGATGTACCGTGAAGGACGATACGAAGAGGCGTTAGGGTTCTACACGGAGGCAATCGCCATGGCTAAGACTAACCCTCAGAAGATCGCTTTGCATAGCAATCGAGCCGCGTGCTTTCTGAAGCTTCACGATTTCAAAAAGGTTACGTCTCTTCGTCGCTCCCTTTTGAATTTGTTACTGGTGCTTTGGTTTGGAAAGCGATTTTCTATGTTTTGTAAAGCAGCAGAAGAGTGCACCTCGGTGCTTGAGCTTGATCACAAGCACAGTGGGGCATTGATGCTACGGGCTCAAACGCTTGTCACCCTGAAGGAGTATCATTCAGCTCTTTTTGATGTCAACAGACTGTTAGAGTTGAATCCATCTTCAGAGGTTTATCAAAATCTTCAAGCTCGCTTGAAGACACAGTTGTCACTTGCTCCAATACCAGAATCAGAAGAGGAGTTTGAAGAACAGGAAGACGAGGAGTTTGAAGAACAGGAAGACGAGGATCCTGAAGTGATACTTGAAGAGGAGAATGAAAGAGAAGAGATGGGAGACAAATATTCTTCGATTTCTAATATTATAACAGAACAGAAGGATGAACTTGGTAAAGGCATTGTTATTACCGAATGTGCTGCTCATGAAGCAGAGCCCAAGTTTTCAATGAAGCAAGGGGGAAACCAAAACTATGACTCTAAGAAGTTCATAGCAGATGCTATAGCTCCTAAAGCACCAAGCAGGGAATCCAATGAGGAACATTCAAAAGGATGGCAAACTATTCCAAAACCAAAAGGACATTCAGCTCTAGACTACGCACGGTGGGATAGTGTTGAAGATGATTCTAGTGATGATGATGGTGACAGTGAAGAAGAAGAATCTTTGCCTCAATACCGGTTTCGTGTAAGAACAGTTGGTGTACGTCCTGTAAAGTGA 945 0.4402 MAAPNRIERAHQMYREGRYEEALGFYTEAIAMAKTNPQKIALHSNRAACFLKLHDFKKVTSLRRSLLNLLLVLWFGKRFSMFCKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLQARLKTQLSLAPIPESEEEFEEQEDEEFEEQEDEDPEVILEEENEREEMGDKYSSISNIITEQKDELGKGIVITECAAHEAEPKFSMKQGGNQNYDSKKFIADAIAPKAPSRESNEEHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDGDSEEEESLPQYRFRVRTVGVRPVK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8177g00004 314 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 81 314 - -
Vium8177g00004 314 MobiDBLite consensus disorder prediction 222 302 - -
Vium8177g00004 314 MobiDBLite consensus disorder prediction 151 190 - -
Vium8177g00004 314 Gene3D Tetratricopeptide repeat domain 2 175 IPR011990 GO:0005515
Vium8177g00004 314 SMART tpr_5 3 36 IPR019734 GO:0005515
Vium8177g00004 314 SMART tpr_5 100 133 IPR019734 GO:0005515
Vium8177g00004 314 SUPERFAMILY TPR-like 6 147 IPR011990 GO:0005515
Vium8177g00004 314 MobiDBLite consensus disorder prediction 249 263 - -
Vium8177g00004 314 MobiDBLite consensus disorder prediction 281 295 - -
Vium8177g00004 314 MobiDBLite consensus disorder prediction 154 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8177g00004 Vium-Chr8177 19429 23128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8177g00004 2 147 Calmodulin-binding Proteins AT3G25230 27.215 6.01e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8177g00004 - - vum:124846515 542.732