Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8172g00003 ATGGAAAACGAATTATTAACTCGTGCCTCACTTGCCCCAACATCGGAGTTACTTTCTCGGACCATACTTGCTGTATTTGACACTGTGAAAGCAGCCCATGAGGTGGTCATTCACAAGGAAAATTTTAAGAGATTCGCTATTCATTTGGAGAATGTTTCGCTTATATTAAAGTCTTTGTCAAAGGAAGACATACACAACGCCTGGAGCTTGCAAAAGGCTATGGCTGGTCTCAACCGAGAGGTTGAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTCTAATCAATTCAAGAAAGATTGTTACCCGCTTGAATTGTTGTACCAAGGATATAGGTCGTGCCATAACTCTTATCCCTTTGGCCTCTTTAAACATTAGCTCTGGTTTAAATCAACAGATAAGTGAATTGTGTCAGAAAATGTTAGATGCTGAGTATCAAACAGCTGCAACAGATGAGGAGATTTTGAAGAAAGTTGAGACAGCAATACAAGAGGGAAATGTTGATCGGTCGTATGCAACTCAGTTGCTAGCTGGCACTGCACGTGCCATTGGTGTCCCCGTGGAGCATGTTGCTTTGAAAAGAGAATTCGAAGATCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATGGACATGTCAGAAGCTCTACACATGGAGCAGATTATTGCAGTGCTTGGAAAGGCAGATTTTATAACTTCAGCACAAGAGAAGGAAAGTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGAGACCATTGAGAGCTCTGCATTCCTTTTACTGCCCAATCTCTCATGAAATCATGGTGGACCCTGTGGAGACTTCTTCTGGGAAGACATTTGAGAGAAGTGAAATAGAGAAATGGTTTGCTGAAGGGAACAATCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAAACTCCTGAGGCCAAATAAAACTCTTAAAATGTCTATTCAAGAATGGAAGGATAGGAACACTATGATTACCATTTCTATCATCAAATCCGAACTTGAAACGAATGATGAAGAGGAAGTGATTCGGTCCTTAGACAAATTACAGGACCTGTGCTTAGAAAGAGAGGTGCACCGGGAATGGTTACAAATTGAGAATTACATTACTGTTCTCATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTTTCTATGCTTGTAATGGATAATGCGGAGAACAAGGAAGATATTGCTATAGTGGATAATGGACTAGGATTGATTGTTCGCTCACTTTCACGACAAGTTGAGGAGCGCAAGTTGGCATTGAAGTTGATGTTGGAGCTATCTAAAAGTAAAACGTTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGCTGGTAACAATGTTAAATAGTGATGATGTCGAAGCAGCCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCCAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGACCAGAAAATGTGAAAAGAGTCATGGCTGAAACTTTATCAGAAATTACATTAATCGACCAGAATAAATTGTCTTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAGGTGTCTGTCAAAGCTTTACTACAGCTCTCAAGCATGCCAGAGAATTGCCTGCAGATGATTAAGGAAGGTGTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCGATGTCAACAACTCACCAACAAGCTGAAGCAGAACAGCTTTCATTGTTAGATTCCGATGAAGACGTGTACAAATTCTTCTCTCTAATTTCTTTGACAGACCCTGAGATACAAAACAAGATTCTCAAAGCTTTTCAGGCGCTGAGCCAATCTTTCTATGGCTTCCGGACCAGAAAGCGGTTGAGACAGATATCGGCCGCTAAATTATTGGTAAACTTATTGGAGACTAATACTCAAAAAGTTCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGATGATTATGGCAACATCTCACCACATATAACTGAAAGATTCATTGAAGTCTTGCTTGCCATCATTGATGCTTCTGATGACGCAGAGGAGATGATTACTGTAATGGGTATCATCTCTAAACTACCGCAGGAGTCTCAAATGACCCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACCGATCAACATAGCCATGCCTCAGACAAAATCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCGTCGAATCTGGAGTGGCAGAAGAGTGTGGCTTTAGAAGGCATAATCCCAGTACTGGTGCAAAAGCTGCTTTCTGGAACACCCTTTACAAAACAAAATGCAGCCATTTCGATCAAGCAGTTTTCGGAAAGTTCCTATCGCTTGAGCGAGCGGATAAAGAAGCCAGGTATTTTCAAATGCTGCTTTGTAGCCCGAGAAACTGGTTGCCCAGCACACTTGGGCACCTGCTCAATCGAGAATTCATTCTGCATTCTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTAGTGACACGGATGTTAGAACCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATATTGAAGCACCGCAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCTATTGCACCGATGTTAAAATTGTTGAGTGTTGAAGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTACAAAGCTGTGGCTACAATGGCCTTGGTAGGCATAACTCAAGGGAAAGATAGCCGTTTGAAAAGTCTTGCTGGTAGAGGCCTTGCTCAATTGGGTATACTTGATAAACAGTCTTCTTATTTTTAG 3018 0.4122 MENELLTRASLAPTSELLSRTILAVFDTVKAAHEVVIHKENFKRFAIHLENVSLILKSLSKEDIHNAWSLQKAMAGLNREVEVAKQLSVECNSRSKVYLLINSRKIVTRLNCCTKDIGRAITLIPLASLNISSGLNQQISELCQKMLDAEYQTAATDEEILKKVETAIQEGNVDRSYATQLLAGTARAIGVPVEHVALKREFEDLKNEMENAKSRMDMSEALHMEQIIAVLGKADFITSAQEKESKYFEKRNSLGERPLRALHSFYCPISHEIMVDPVETSSGKTFERSEIEKWFAEGNNLCPLTRLPLDTKLLRPNKTLKMSIQEWKDRNTMITISIIKSELETNDEEEVIRSLDKLQDLCLEREVHREWLQIENYITVLIGLLSSKNREIRKRVLLILSMLVMDNAENKEDIAIVDNGLGLIVRSLSRQVEERKLALKLMLELSKSKTLCSLIGNIQGSILLLVTMLNSDDVEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENVKRVMAETLSEITLIDQNKLSLVKDGALQPLLQLLLNDDLEIKKVSVKALLQLSSMPENCLQMIKEGVAQPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTHQQAEAEQLSLLDSDEDVYKFFSLISLTDPEIQNKILKAFQALSQSFYGFRTRKRLRQISAAKLLVNLLETNTQKVRVNALKLFYCLTEDDDYGNISPHITERFIEVLLAIIDASDDAEEMITVMGIISKLPQESQMTQWLLDSGALKTILTCLTDQHSHASDKIIENSVQALCRFTVSSNLEWQKSVALEGIIPVLVQKLLSGTPFTKQNAAISIKQFSESSYRLSERIKKPGIFKCCFVARETGCPAHLGTCSIENSFCILQANALEPLVRLLSDTDVRTCEASLDAILTLVDIEAPQSGSKVLANSNAIAPMLKLLSVEAPRLQEKILIALERIFQLDEVRNKYKAVATMALVGITQGKDSRLKSLAGRGLAQLGILDKQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8172g00003 1005 SUPERFAMILY RING/U-box 251 334 - -
Vium8172g00003 1005 SUPERFAMILY ARM repeat 335 625 IPR016024 -
Vium8172g00003 1005 Pfam MCAfunc domain 29 153 IPR045766 -
Vium8172g00003 1005 Coils Coil 195 222 - -
Vium8172g00003 1005 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vium8172g00003 1005 SUPERFAMILY ARM repeat 533 854 IPR016024 -
Vium8172g00003 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1005 - -
Vium8172g00003 1005 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Vium8172g00003 1005 Pfam Armadillo/beta-catenin-like repeat 875 908 IPR000225 GO:0005515
Vium8172g00003 1005 SUPERFAMILY ARM repeat 873 995 IPR016024 -
Vium8172g00003 1005 CDD RING-Ubox_PUB 265 314 IPR045210 -
Vium8172g00003 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 335 IPR013083 -
Vium8172g00003 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Vium8172g00003 1005 Gene3D - 863 983 IPR011989 -
Vium8172g00003 1005 SMART arm_5 572 615 IPR000225 GO:0005515
Vium8172g00003 1005 SMART arm_5 752 796 IPR000225 GO:0005515
Vium8172g00003 1005 SMART arm_5 531 571 IPR000225 GO:0005515
Vium8172g00003 1005 SMART arm_5 490 530 IPR000225 GO:0005515
Vium8172g00003 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Vium8172g00003 1005 SMART arm_5 872 913 IPR000225 GO:0005515
Vium8172g00003 1005 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vium8172g00003 1005 Gene3D - 533 658 IPR011989 -
Vium8172g00003 1005 Gene3D - 659 858 IPR011989 -
Vium8172g00003 1005 Gene3D - 336 532 IPR011989 -
Vium8172g00003 1005 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8172g00003 Vium-Chr8172 4908 10649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8172g00003 264 1005 U-box Gene Family AT1G20780 27.945 3.09e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8172g00003 - - gmx:100818273 1604.73