Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium8172g00002 | ATGGAAAACGAATTATTAACTCGTGCCTCACTTGCCCCAACATCGGAGTTACTTTCTCGGACCATACTTGCTGTATTTGACACTGTGAAAGCAGCCCATGAGGTGGTCATTCACAAGGAAAATTTTAAGAGATTCGCTATTCATTTGGAGAATGTTTCGCTTATATTAAAGTCTTTGTCAAAGGAAGACATACACAACGCCTGGAGCTTGCAAAAGGCTATGGCTGGTCTCAACCGAGAGGTTGAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAGTAGAAGTAAGGTTTATCTTCTAATCAATTCAAGAAAGATTGTTACCCGCTTGAATTGTTGTACCAAGGATATAGGTCGTGCCATAACTCTTATCCCTTTGGCCTCTTTAAACATTAGCTCTGGTTTAAATCAACAGATAAGTGAATTGTGTCAGAAAATGTTAGATGCTGAGTATCAAACAGCTGCAACAGATGAGGAGATTTTGAAGAAAGTTGAGACAGCAATACAAGAGGGAAATGTTGATCGGTCGTATGCAACTCAGTTGCTAGCTGGCACTGCACGTGCCATTGGTGTCCCCGTGGAGCATGTTGCTTTGAAAAGAGAATTCGAAGATCTGAAAAATGAAATGGAAAATGCCAAGTCAAGGATGGACATGTCAGAAGCTCTACACATGGAGCAGATTATTGCAGTGCTTGGAAAGGCAGATTTTATAACTTCAGCACAAGAGAAGGAAAGTAAGTATTTTGAGAAGAGAAATTCCTTGGGAGAGAGACCATTGAGAGCTCTGCATTCCTTTTACTGCCCAATCTCTCATGAAATCATGGTGGACCCTGTGGAGACTTCTTCTGGGAAGACATTTGAGAGAAGTGAAATAGAGAAATGGTTTGCTGAAGGGAACAATCTCTGTCCCTTGACCAGGTTGCCTCTGGATACTAAACTCCTGAGGCCAAATAAAACTCTTAAAATGTCTATTCAAGAATGGAAGGATAGGAACACTATGATTACCATTTCTATCATCAAATCCGAACTTGAAACGAATGATGAAGAGGAAGTGATTCGGTCCTTAGACAAATTACAGGACCTGTGCTTAGAAAGAGAGGTGCACCGGGAATGGTTACAAATTGAGAATTACATTACTGTTCTCATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTACTCATCCTTTCTATGCTTGTAATGGATAATGCGGAGAACAAGGAAGATATTGCTATAGTGGATAATGGACTAGGATTGATTGTTCGCTCACTTTCACGACAAGTTGAGGAGCGCAAGTTGGCATTGAAGTTGATGTTGGAGCTATCTAAAAGTAAAACGTTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTGCTGGTAACAATGTTAAATAGTGATGATGTCGAAGCAGCCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCCAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTTTCTACAGGACCAGAAAATGTGAAAAGAGTCATGGCTGAAACTTTATCAGAAATTACATTAATCGACCAGAATAAATTGTCTTTGGTCAAAGATGGGGCATTGCAACCTCTTCTTCAGCTGCTCTTAAATGATGATTTGGAAATCAAGAAGGTGTCTGTCAAAGCTTTACTACAGCTCTCAAGCATGCCAGAGAATTGCCTGCAGATGATTAAGGAAGGTGTTGCTCAACCACTGTTGGAACTGCTATACTGTCACAGTTTACAGTCACCTACTCTGCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCGATGTCAACAACTCACCAACAAGCTGAAGCAGAACAGCTTTCATTGTTAGATTCCGATGAAGACGTGTACAAATTCTTCTCTCTAATTTCTTTGACAGACCCTGAGATACAAAACAAGATTCTCAAAGCTTTTCAGGCGCTGAGCCAATCTTTCTATGGCTTCCGGACCAGAAAGCGGTTGAGACAGATATCGGCCGCTAAATTATTGGTAAACTTATTGGAGACTAATACTCAAAAAGTTCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTGACAGAAGACGATGATTATGGCAACATCTCACCACATATAACTGAAAGATTCATTGAAGTCTTGCTTGCCATCATTGATGCTTCTGATGACGCAGAGGAGATGATTACTGTAATGGGTATCATCTCTAAACTACCGCAGGAGTCTCAAATGACCCAGTGGCTTCTAGATTCTGGGGCACTTAAAACTATTTTGACTTGTCTTACCGATCAACATAGCCATGCCTCAGACAAAATCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCGTCGAATCTGGAGTGGCAGAAGAGTGTGGCTTTAGAAGGCATAATCCCAGTACTGGTGCAAAAGCTGCTTTCTGGAACACCCTTTACAAAACAAAATGCAGCCATTTCGATCAAGCAGTTTTCGGAAAGTTCCTATCGCTTGAGCGAGCGGATAAAGAAGCCAGGTATTTTCAAATGCTGCTTTGTAGCCCGAGAAACTGGTTGCCCAGCACACTTGGGCACCTGCTCAATCGAGAATTCATTCTGCATTCTGCAAGCTAATGCCTTGGAGCCCCTTGTGCGCTTGCTTAGTGACACGGATGTTAGAACCTGCGAAGCTTCCTTAGATGCGATACTAACTTTGGTTGATATTGAAGCACCGCAGAGTGGAAGTAAGGTACTTGCAAATTCAAATGCTATTGCACCGATGTTAAAATTGTTGAGTGTTGAAGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTACAAAGCTGTGGCTACAATGGCCTTGGTAGGCATAACTCAAGGGAAAGATAGCCGTTTGAAAAGTCTTGCTGGTAGAGGCCTTGCTCAATTGGGTATACTTGATAAACAGTCTTCTTATTTTTAG | 3018 | 0.4122 | MENELLTRASLAPTSELLSRTILAVFDTVKAAHEVVIHKENFKRFAIHLENVSLILKSLSKEDIHNAWSLQKAMAGLNREVEVAKQLSVECNSRSKVYLLINSRKIVTRLNCCTKDIGRAITLIPLASLNISSGLNQQISELCQKMLDAEYQTAATDEEILKKVETAIQEGNVDRSYATQLLAGTARAIGVPVEHVALKREFEDLKNEMENAKSRMDMSEALHMEQIIAVLGKADFITSAQEKESKYFEKRNSLGERPLRALHSFYCPISHEIMVDPVETSSGKTFERSEIEKWFAEGNNLCPLTRLPLDTKLLRPNKTLKMSIQEWKDRNTMITISIIKSELETNDEEEVIRSLDKLQDLCLEREVHREWLQIENYITVLIGLLSSKNREIRKRVLLILSMLVMDNAENKEDIAIVDNGLGLIVRSLSRQVEERKLALKLMLELSKSKTLCSLIGNIQGSILLLVTMLNSDDVEAAKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENVKRVMAETLSEITLIDQNKLSLVKDGALQPLLQLLLNDDLEIKKVSVKALLQLSSMPENCLQMIKEGVAQPLLELLYCHSLQSPTLLEQVVATIMHLAMSTTHQQAEAEQLSLLDSDEDVYKFFSLISLTDPEIQNKILKAFQALSQSFYGFRTRKRLRQISAAKLLVNLLETNTQKVRVNALKLFYCLTEDDDYGNISPHITERFIEVLLAIIDASDDAEEMITVMGIISKLPQESQMTQWLLDSGALKTILTCLTDQHSHASDKIIENSVQALCRFTVSSNLEWQKSVALEGIIPVLVQKLLSGTPFTKQNAAISIKQFSESSYRLSERIKKPGIFKCCFVARETGCPAHLGTCSIENSFCILQANALEPLVRLLSDTDVRTCEASLDAILTLVDIEAPQSGSKVLANSNAIAPMLKLLSVEAPRLQEKILIALERIFQLDEVRNKYKAVATMALVGITQGKDSRLKSLAGRGLAQLGILDKQSSYF | 1005 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium8172g00002 | 1005 | SUPERFAMILY | RING/U-box | 251 | 334 | - | - | |
| Vium8172g00002 | 1005 | SUPERFAMILY | ARM repeat | 335 | 625 | IPR016024 | - | |
| Vium8172g00002 | 1005 | Pfam | MCAfunc domain | 29 | 153 | IPR045766 | - | |
| Vium8172g00002 | 1005 | Coils | Coil | 195 | 222 | - | - | |
| Vium8172g00002 | 1005 | SMART | Ubox_2 | 264 | 327 | IPR003613 | GO:0004842|GO:0016567 | |
| Vium8172g00002 | 1005 | SUPERFAMILY | ARM repeat | 533 | 854 | IPR016024 | - | |
| Vium8172g00002 | 1005 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 15 | 1005 | - | - | |
| Vium8172g00002 | 1005 | Pfam | Armadillo/beta-catenin-like repeat | 532 | 570 | IPR000225 | GO:0005515 | |
| Vium8172g00002 | 1005 | Pfam | Armadillo/beta-catenin-like repeat | 875 | 908 | IPR000225 | GO:0005515 | |
| Vium8172g00002 | 1005 | SUPERFAMILY | ARM repeat | 873 | 995 | IPR016024 | - |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium8172g00002 | - | - | gmx:100818273 | 1604.73 |
Showing 1 to 1 of 1 entries